BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BURTA (50S ribosomal protein L27 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK +GG+ +  G IIVRQRGTR H G+ VGMGKDHTL+AL +G VKF     + +  V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFTTKGAAKKHTVVVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BURPS (50S ribosomal protein L27 OS=Burkholderia pseudomallei GN=rpmA PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK +GG+ +  G IIVRQRGTR H G+ VGMGKDHTL+AL +G VKF     + +  V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFTTKGAAKKHTVVVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BURP6 (50S ribosomal protein L27 OS=Burkholderia pseudomallei (strain 668) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK +GG+ +  G IIVRQRGTR H G+ VGMGKDHTL+AL +G VKF     + +  V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFTTKGAAKKHTVVVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BURP1 (50S ribosomal protein L27 OS=Burkholderia pseudomallei (strain 1710b) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK +GG+ +  G IIVRQRGTR H G+ VGMGKDHTL+AL +G VKF     + +  V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFTTKGAAKKHTVVVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BURP0 (50S ribosomal protein L27 OS=Burkholderia pseudomallei (strain 1106a) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK +GG+ +  G IIVRQRGTR H G+ VGMGKDHTL+AL +G VKF     + +  V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFTTKGAAKKHTVVVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BURMS (50S ribosomal protein L27 OS=Burkholderia mallei (strain SAVP1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK +GG+ +  G IIVRQRGTR H G+ VGMGKDHTL+AL +G VKF     + +  V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFTTKGAAKKHTVVVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BURMA (50S ribosomal protein L27 OS=Burkholderia mallei GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK +GG+ +  G IIVRQRGTR H G+ VGMGKDHTL+AL +G VKF     + +  V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFTTKGAAKKHTVVVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BURM9 (50S ribosomal protein L27 OS=Burkholderia mallei (strain NCTC 10229) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK +GG+ +  G IIVRQRGTR H G+ VGMGKDHTL+AL +G VKF     + +  V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFTTKGAAKKHTVVVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BURM7 (50S ribosomal protein L27 OS=Burkholderia mallei (strain NCTC 10247) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK +GG+ +  G IIVRQRGTR H G+ VGMGKDHTL+AL +G VKF     + +  V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTRMHAGENVGMGKDHTLFALVDGHVKFTTKGAAKKHTVVVVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BRAHW (50S ribosomal protein L27 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.876e-19
Identity = 47/81 (58.02%), Postives = 60/81 (74.07%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK  GS+KNGRDS+ K LGVK +GG++VI GNIIVRQRGT+FH G  V +G+DHT++A   G VKF  +K  G+K + V
Sbjct:    2 AHKKGGGSSKNGRDSQSKRLGVKVYGGQKVISGNIIVRQRGTQFHAGRNVDIGRDHTIFATASGYVKFHTNKF-GKKTISV 81          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_BURTA2.876e-1956.6350S ribosomal protein L27 OS=Burkholderia thailand... [more]
RL27_BURPS2.876e-1956.6350S ribosomal protein L27 OS=Burkholderia pseudoma... [more]
RL27_BURP62.876e-1956.6350S ribosomal protein L27 OS=Burkholderia pseudoma... [more]
RL27_BURP12.876e-1956.6350S ribosomal protein L27 OS=Burkholderia pseudoma... [more]
RL27_BURP02.876e-1956.6350S ribosomal protein L27 OS=Burkholderia pseudoma... [more]
RL27_BURMS2.876e-1956.6350S ribosomal protein L27 OS=Burkholderia mallei (... [more]
RL27_BURMA2.876e-1956.6350S ribosomal protein L27 OS=Burkholderia mallei G... [more]
RL27_BURM92.876e-1956.6350S ribosomal protein L27 OS=Burkholderia mallei (... [more]
RL27_BURM72.876e-1956.6350S ribosomal protein L27 OS=Burkholderia mallei (... [more]
RL27_BRAHW2.876e-1958.0250S ribosomal protein L27 OS=Brachyspira hyodysent... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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