BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_METFK (50S ribosomal protein L27 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LGVK FG + V  G+IIVRQRGT+ HPG+ VG+GKDHTL+A  +G+V F      GRK V + P
Sbjct:    2 AHKKAGGSSRNGRDSNAQRLGVKAFGDQFVSAGSIIVRQRGTKMHPGENVGIGKDHTLFAKVDGKVAFSVKGALGRKLVSIIP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_GLOVI (50S ribosomal protein L27 OS=Gloeobacter violaceus GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYA 355
            A KK  GST+NGRDS  + LGVK++GGERV  GNI++RQRGT+ HPG  VG G D TL+AL EG V FE+     RK V V P     + P+ A
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKRYGGERVKAGNILIRQRGTKIHPGANVGRGSDDTLFALIEGIVTFERLG-RDRKKVSVYPLAQTAMQPVAA 94          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_GEOUR (50S ribosomal protein L27 OS=Geobacter uraniireducens (strain Rf4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+NGRDS  + LG KKFGGE V  GNII RQ GT+ HPG+ VG+G+D+TL+AL EG VKFE+     RK V V P
Sbjct:    2 AHKKGVGSTRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGRDYTLFALIEGVVKFERMG-RDRKKVSVYP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_DICTD (50S ribosomal protein L27 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE-KHKLSGRKWVHV 316
            A KK+ G+++NGRDS PK LGVK+F G+ V  GNI+VRQRGT+ +PG  VGMG+D TLYAL+ G VKF  KH   G+K+V+V
Sbjct:    2 AHKKSGGASRNGRDSNPKYLGVKRFEGQLVEAGNILVRQRGTKIYPGMNVGMGRDFTLYALQPGIVKFSIKH---GKKYVNV 80          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_COREF (50S ribosomal protein L27 OS=Corynebacterium efficiens GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            ATKK A S+ NGRDS+ K LGVK+FGG++V  G I+VRQRGT+FHPG+ VG G D TL+ALK G V+F   +   R+ V++   E
Sbjct:    2 ATKKGASSSSNGRDSEAKRLGVKRFGGQQVNAGEILVRQRGTKFHPGENVGRGGDDTLFALKTGAVQFSTKR--NRRMVNIVENE 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BAUCH (50S ribosomal protein L27 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK  GST+NGRDS+ K LGVK FG +    G+II+RQRGT+FHPG  VG GKDHTL+AL +G+V F+  K   RK++ +
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKIFGHQIAKAGSIIIRQRGTKFHPGTNVGCGKDHTLFALTKGKVHFQTKK-GNRKFISI 81          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RK27_ODOSI (50S ribosomal protein L27, chloroplastic OS=Odontella sinensis GN=rpl27 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK AGSTKNGRDS  K LGVK+FGG+RV  GNI+VRQRG +F PG  VG GKD TLYAL +G V F+ +K + +K +++
Sbjct:    2 AHKKGAGSTKNGRDSNAKRLGVKRFGGQRVKAGNILVRQRGMKFTPGLNVGCGKDFTLYALTDGIVNFD-YKNAQQKRINI 81          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VESOH (50S ribosomal protein L27 OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST NGRDS  K LGVK+FGG+ V+ GNI+VRQRGT+FHPG  V  GKD TL+A  +GRV F K      +++ +E
Sbjct:    2 AHKKAGGSTNNGRDSVSKRLGVKRFGGQVVLAGNILVRQRGTKFHPGTNVRKGKDDTLFATMDGRVVFSKKGKFMYQYISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SYNP6 (50S ribosomal protein L27 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRK 304
            A KK  GST+NGRDS  + LGVKKFGGE V  G+IIVRQRGT+FHPG  VG G D TL+AL +G V FE+    G+K
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKKFGGEVVRSGSIIVRQRGTKFHPGVNVGRGGDDTLFALIDGVVTFERKGKGGKK 78          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SYNE7 (50S ribosomal protein L27 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRK 304
            A KK  GST+NGRDS  + LGVKKFGGE V  G+IIVRQRGT+FHPG  VG G D TL+AL +G V FE+    G+K
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKKFGGEVVRSGSIIVRQRGTKFHPGVNVGRGGDDTLFALIDGVVTFERKGKGGKK 78          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_METFK4.906e-1955.4250S ribosomal protein L27 OS=Methylobacillus flage... [more]
RL27_GLOVI4.906e-1954.2650S ribosomal protein L27 OS=Gloeobacter violaceus... [more]
RL27_GEOUR4.906e-1960.2450S ribosomal protein L27 OS=Geobacter uraniireduc... [more]
RL27_DICTD4.906e-1959.7650S ribosomal protein L27 OS=Dictyoglomus turgidum... [more]
RL27_COREF4.906e-1955.2950S ribosomal protein L27 OS=Corynebacterium effic... [more]
RL27_BAUCH4.906e-1956.7950S ribosomal protein L27 OS=Baumannia cicadellini... [more]
RK27_ODOSI4.906e-1960.4950S ribosomal protein L27, chloroplastic OS=Odonte... [more]
RL27_VESOH6.408e-1956.1050S ribosomal protein L27 OS=Vesicomyosocius okuta... [more]
RL27_SYNP66.408e-1962.3450S ribosomal protein L27 OS=Synechococcus sp. (st... [more]
RL27_SYNE76.408e-1962.3450S ribosomal protein L27 OS=Synechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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