BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_GEOBB (50S ribosomal protein L27 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LG KKFGGE V  GNII RQ GT+ HPG+ VG+GKD+TL+AL EG VKFE+     RK V V P
Sbjct:    2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFALIEGVVKFERMG-KDRKKVSVYP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_CHRVO (50S ribosomal protein L27 OS=Chromobacterium violaceum GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 331
            A KK  GS++NGRDS+ K LGVK +G E +  G+IIVRQRGT+FH G+ VG GKDHTL+A  +G V+F       RK V+V P  G
Sbjct:    2 AHKKAGGSSRNGRDSEAKRLGVKVYGSELIPAGSIIVRQRGTKFHAGENVGQGKDHTLFAKVDGYVEFTVKGAQQRKTVNVVPYTG 87          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_CAMC5 (50S ribosomal protein L27 OS=Campylobacter curvus (strain 525.92) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GST+N RDS  + LGVKKFGGE V  GNII+RQRGT  H G  VG+GKDHT++AL +G VKFE+ K   RK V V P
Sbjct:    2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGSNVGLGKDHTIFALIDGFVKFER-KDKNRKKVSVYP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BORBZ (50S ribosomal protein L27 OS=Borrelia burgdorferi (strain ZS7) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            AT K+ GS+KNGRDS  K LGVK+ GG+ V  G IIVRQRGT+FH G  VG+G+D+T++AL  G+V+F+   L GRK+V +
Sbjct:    2 ATSKSGGSSKNGRDSISKRLGVKRSGGQFVKAGEIIVRQRGTKFHKGKNVGLGRDYTIFALSSGKVEFK--TLKGRKYVSI 80          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BORBU (50S ribosomal protein L27 OS=Borrelia burgdorferi GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            AT K+ GS+KNGRDS  K LGVK+ GG+ V  G IIVRQRGT+FH G  VG+G+D+T++AL  G+V+F+   L GRK+V +
Sbjct:    2 ATSKSGGSSKNGRDSISKRLGVKRSGGQFVKAGEIIVRQRGTKFHKGKNVGLGRDYTIFALSSGKVEFK--TLKGRKYVSI 80          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BORAP (50S ribosomal protein L27 OS=Borrelia afzelii (strain PKo) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            AT K+ GS+KNGRDS  K LGVK+ GG+ V  G IIVRQRGT+FH G  VG+G+D+T++AL  G+V+F+   L GRK+V +
Sbjct:    2 ATSKSGGSSKNGRDSISKRLGVKRSGGQFVKAGEIIVRQRGTKFHKGKNVGLGRDYTIFALSSGKVEFK--TLKGRKYVSI 80          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_STRCO (50S ribosomal protein L27 OS=Streptomyces coelicolor GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK A ST+NGRDS  + LGVK+FGG+ V  G I+VRQRGT FHPG  VG G D TL+AL+ G V+F  H+  GRK V++ P
Sbjct:    2 AHKKGASSTRNGRDSNAQRLGVKRFGGQAVNAGEILVRQRGTHFHPGAGVGRGGDDTLFALQAGAVQFGTHR--GRKVVNIVP 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HERA2 (50S ribosomal protein L27 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GS++NGRDSKP+  G+K+FGGE V PG+IIVRQ GT+  PG  VG+G+D+T+Y++ +G VKFE +  + +K V V P E
Sbjct:    2 AHKKGVGSSRNGRDSKPQMRGIKRFGGELVQPGSIIVRQCGTKVRPGANVGLGRDYTIYSMIDGHVKFEDYSRT-QKMVSVVPAE 85          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_GEOSM (50S ribosomal protein L27 OS=Geobacter sp. (strain M21) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LG KKFGGE V  GNII RQ GT+ HPG+ VG+GKD+TL+AL EG VKFE+     RK V V P
Sbjct:    2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFALIEGVVKFERMG-RDRKKVSVYP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_GEOSF (50S ribosomal protein L27 OS=Geobacter sp. (strain FRC-32) GN=rpmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEK 283
            A KK  GS++NGRDS  + LG KKFGGE V  GNII RQ GT+ HPG+ VG+GKD+TL+AL EG VKFE+
Sbjct:    2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFALIEGVVKFER 71          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_GEOBB6.408e-1960.2450S ribosomal protein L27 OS=Geobacter bemidjiensi... [more]
RL27_CHRVO6.408e-1954.6550S ribosomal protein L27 OS=Chromobacterium viola... [more]
RL27_CAMC56.408e-1961.4550S ribosomal protein L27 OS=Campylobacter curvus ... [more]
RL27_BORBZ6.408e-1956.7950S ribosomal protein L27 OS=Borrelia burgdorferi ... [more]
RL27_BORBU6.408e-1956.7950S ribosomal protein L27 OS=Borrelia burgdorferi ... [more]
RL27_BORAP6.408e-1956.7950S ribosomal protein L27 OS=Borrelia afzelii (str... [more]
RL27_STRCO8.369e-1957.8350S ribosomal protein L27 OS=Streptomyces coelicol... [more]
RL27_HERA28.369e-1954.1250S ribosomal protein L27 OS=Herpetosiphon auranti... [more]
RL27_GEOSM8.369e-1960.2450S ribosomal protein L27 OS=Geobacter sp. (strain... [more]
RL27_GEOSF8.369e-1964.2950S ribosomal protein L27 OS=Geobacter sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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