BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HAEI8 (50S ribosomal protein L27 OS=Haemophilus influenzae (strain 86-028NP) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMG+DHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGRDHTLFATADGKVKFEVKGEKSRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_AGRVS (50S ribosomal protein L27 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.128e-23
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GS++NGRDS+ K LGVKKFGGE VIPGNIIVRQRGT++HPG  VGMGKDHT++AL  G V + + K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEVVIPGNIIVRQRGTQWHPGANVGMGKDHTIFALTTGNVTY-RTKSNGRVFVSVMPK 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERE8 (50S ribosomal protein L27 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+ALK+G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGIDVGCGKDHTLFALKDGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBSL (50S ribosomal protein L27 OS=Vibrio splendidus (strain LGP32) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL EG+VKF       RK+V +E
Sbjct:    2 AHKKAGGSTNNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALTEGKVKFAVKGPKNRKFVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEWM (50S ribosomal protein L27 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGVGRDHTLFALTDGKVKFEVKGPNNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHESW (50S ribosomal protein L27 OS=Shewanella sp. (strain W3-18-1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPNNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHESR (50S ribosomal protein L27 OS=Shewanella sp. (strain MR-7) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGVGRDHTLFALTDGKVKFEVKGPNNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHESM (50S ribosomal protein L27 OS=Shewanella sp. (strain MR-4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGVGRDHTLFALTDGKVKFEVKGPNNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHESA (50S ribosomal protein L27 OS=Shewanella sp. (strain ANA-3) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPNNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEPC (50S ribosomal protein L27 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPNNRKFISIE 83          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_HAEI81.128e-2362.9650S ribosomal protein L27 OS=Haemophilus influenza... [more]
RL27_AGRVS1.128e-2365.4850S ribosomal protein L27 OS=Agrobacterium vitis (... [more]
RL27_YERE81.474e-2363.4150S ribosomal protein L27 OS=Yersinia enterocoliti... [more]
RL27_VIBSL1.474e-2364.6350S ribosomal protein L27 OS=Vibrio splendidus (st... [more]
RL27_SHEWM1.474e-2362.2050S ribosomal protein L27 OS=Shewanella woodyi (st... [more]
RL27_SHESW1.474e-2362.2050S ribosomal protein L27 OS=Shewanella sp. (strai... [more]
RL27_SHESR1.474e-2362.2050S ribosomal protein L27 OS=Shewanella sp. (strai... [more]
RL27_SHESM1.474e-2362.2050S ribosomal protein L27 OS=Shewanella sp. (strai... [more]
RL27_SHESA1.474e-2362.2050S ribosomal protein L27 OS=Shewanella sp. (strai... [more]
RL27_SHEPC1.474e-2362.2050S ribosomal protein L27 OS=Shewanella putrefacie... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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