BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8441 contig Csv1_Contig8441:179..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEON (50S ribosomal protein L27 OS=Shewanella oneidensis GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPNNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PASMU (50S ribosomal protein L27 OS=Pasteurella multocida GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMG+DHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGRDHTLFATADGKVKFEVKGEKNRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_MANSM (50S ribosomal protein L27 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMG+DHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGRDHTLFATADGKVKFEVKGEKSRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACTSZ (50S ribosomal protein L27 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.474e-23
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VGMG+DHTL+A  +G+VKFE      RK+V +
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGSNVGMGRDHTLFATADGKVKFEVKGEKSRKYVSI 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHESH (50S ribosomal protein L27 OS=Shewanella sediminis (strain HAW-EB3) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEPW (50S ribosomal protein L27 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPQNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEPA (50S ribosomal protein L27 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPQNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHELP (50S ribosomal protein L27 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEHH (50S ribosomal protein L27 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFEVKGPQNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PSEHT (50S ribosomal protein L27 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK AGST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGTRFHPG  VG+GKDHT++A  +G+V+FE+     RK+V +
Sbjct:    2 AHKKAAGSTRNGRDSESKRLGVKRFGGESVLAGSIIVRQRGTRFHPGTNVGIGKDHTIFAKADGKVQFEQKGPLNRKYVTI 82          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_SHEON1.474e-2362.2050S ribosomal protein L27 OS=Shewanella oneidensis... [more]
RL27_PASMU1.474e-2362.9650S ribosomal protein L27 OS=Pasteurella multocida... [more]
RL27_MANSM1.474e-2362.9650S ribosomal protein L27 OS=Mannheimia succinicip... [more]
RL27_ACTSZ1.474e-2362.9650S ribosomal protein L27 OS=Actinobacillus succin... [more]
RL27_SHESH1.925e-2362.2050S ribosomal protein L27 OS=Shewanella sediminis ... [more]
RL27_SHEPW1.925e-2362.2050S ribosomal protein L27 OS=Shewanella piezotoler... [more]
RL27_SHEPA1.925e-2362.2050S ribosomal protein L27 OS=Shewanella pealeana (... [more]
RL27_SHELP1.925e-2362.2050S ribosomal protein L27 OS=Shewanella loihica (s... [more]
RL27_SHEHH1.925e-2362.2050S ribosomal protein L27 OS=Shewanella halifaxens... [more]
RL27_PSEHT1.925e-2362.9650S ribosomal protein L27 OS=Pseudoalteromonas hal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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