BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8441 contig Csv1_Contig8441:179..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_METPB (50S ribosomal protein L27 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LGVKKFG E VIPGNIIVRQRGT++HPG  VGMGKDHTL+AL  G+V+FE  +  GR++V V P
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKFGSEAVIPGNIIVRQRGTKWHPGTNVGMGKDHTLFALVPGKVQFETRR--GREFVTVVP 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_METCA (50S ribosomal protein L27 OS=Methylococcus capsulatus GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVK+FGG+ V  GNIIVRQRGT FHPGD VG G+D+TL+AL EGRV+F+    +GRK+V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKRFGGQVVRAGNIIVRQRGTHFHPGDNVGCGRDYTLFALTEGRVEFKVKGPAGRKYVSVIP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_HAEIN (50S ribosomal protein L27 OS=Haemophilus influenzae GN=rpmA PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 310
            ATKK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VGMG+DHTL+A  +G+VKFE      RK+V
Sbjct:    2 ATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGMGRDHTLFATADGKVKFEVKGEKSRKYV 80          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BARQU (50S ribosomal protein L27 OS=Bartonella quintana GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 316
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPGD VG+GKDHTL+AL  G V F++ K + R +V V
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGETVIAGNIIIRQRGTRWHPGDNVGIGKDHTLFALSNGVVSFQR-KANNRSYVSV 81          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACIBY (50S ribosomal protein L27 OS=Acinetobacter baumannii (strain AYE) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            ATKK  GSTKNGRDS PK LGVK +GG+ V  GNIIVRQRGT FH G  VGMG+DHTL+A  +G VKFE     GR++V VE
Sbjct:    2 ATKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACIBT (50S ribosomal protein L27 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            ATKK  GSTKNGRDS PK LGVK +GG+ V  GNIIVRQRGT FH G  VGMG+DHTL+A  +G VKFE     GR++V VE
Sbjct:    2 ATKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACIBS (50S ribosomal protein L27 OS=Acinetobacter baumannii (strain SDF) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            ATKK  GSTKNGRDS PK LGVK +GG+ V  GNIIVRQRGT FH G  VGMG+DHTL+A  +G VKFE     GR++V VE
Sbjct:    2 ATKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACIBC (50S ribosomal protein L27 OS=Acinetobacter baumannii (strain ACICU) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            ATKK  GSTKNGRDS PK LGVK +GG+ V  GNIIVRQRGT FH G  VGMG+DHTL+A  +G VKFE     GR++V VE
Sbjct:    2 ATKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACIB5 (50S ribosomal protein L27 OS=Acinetobacter baumannii (strain AB0057) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            ATKK  GSTKNGRDS PK LGVK +GG+ V  GNIIVRQRGT FH G  VGMG+DHTL+A  +G VKFE     GR++V VE
Sbjct:    2 ATKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_ACIB3 (50S ribosomal protein L27 OS=Acinetobacter baumannii (strain AB307-0294) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.925e-23
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            ATKK  GSTKNGRDS PK LGVK +GG+ V  GNIIVRQRGT FH G  VGMG+DHTL+A  +G VKFE     GR++V VE
Sbjct:    2 ATKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVE 83          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_METPB1.925e-2365.0650S ribosomal protein L27 OS=Methylobacterium popu... [more]
RL27_METCA1.925e-2363.8650S ribosomal protein L27 OS=Methylococcus capsula... [more]
RL27_HAEIN1.925e-2364.5650S ribosomal protein L27 OS=Haemophilus influenza... [more]
RL27_BARQU1.925e-2365.4350S ribosomal protein L27 OS=Bartonella quintana G... [more]
RL27_ACIBY1.925e-2365.8550S ribosomal protein L27 OS=Acinetobacter baumann... [more]
RL27_ACIBT1.925e-2365.8550S ribosomal protein L27 OS=Acinetobacter baumann... [more]
RL27_ACIBS1.925e-2365.8550S ribosomal protein L27 OS=Acinetobacter baumann... [more]
RL27_ACIBC1.925e-2365.8550S ribosomal protein L27 OS=Acinetobacter baumann... [more]
RL27_ACIB51.925e-2365.8550S ribosomal protein L27 OS=Acinetobacter baumann... [more]
RL27_ACIB31.925e-2365.8550S ribosomal protein L27 OS=Acinetobacter baumann... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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