BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_MARAV (50S ribosomal protein L27 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.514e-23
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK AGST+NGRDS+ K LGVK++GGE V  G+IIVRQRGTRFH G  VG+GKDHTL+A  EG+VKFE      RK+V + P
Sbjct:    2 AHKKAAGSTRNGRDSESKRLGVKRYGGESVSAGSIIVRQRGTRFHAGSNVGIGKDHTLFAKAEGQVKFETKGPQNRKFVSIVP 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_SHEFN (50S ribosomal protein L27 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.283e-23
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+AL +G+VKF+    + RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFALTDGKVKFQVKGPNNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_METEP (50S ribosomal protein L27 OS=Methylobacterium extorquens (strain PA1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.283e-23
Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LGVKKFG E VIPGNIIVRQRGT++HPG  VGMGKDHTL+AL  G+V+FE  +  GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKFGSEAVIPGNIIVRQRGTKWHPGTNVGMGKDHTLFALVPGKVQFETRR--GRDFVTVVP 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_METC4 (50S ribosomal protein L27 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.283e-23
Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LGVKKFG E VIPGNIIVRQRGT++HPG  VGMGKDHTL+AL  G+V+FE  +  GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSAGRRLGVKKFGSEAVIPGNIIVRQRGTKWHPGTNVGMGKDHTLFALVPGKVQFETRR--GRDFVTVVP 82          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RHILW (50S ribosomal protein L27 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.288e-23
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGT +HPG  VG+GKDHT++AL  G V + + K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSQSKRLGVKKFGGEAVIAGNIIVRQRGTEWHPGSNVGLGKDHTIFALTAGNVNY-RTKANGRVYVSVMPK 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RHIL3 (50S ribosomal protein L27 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.288e-23
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGT +HPG  VG+GKDHT++AL  G V + + K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSQSKRLGVKKFGGEAVIAGNIIVRQRGTEWHPGSNVGLGKDHTIFALTAGNVNY-RTKANGRVYVSVMPK 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RHIEC (50S ribosomal protein L27 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.288e-23
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGT++HPG  VG+GKDHT++AL  G V + + K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTQWHPGSNVGLGKDHTIFALTAGNVDY-RTKANGRVYVSVMPK 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_RHIE6 (50S ribosomal protein L27 OS=Rhizobium etli (strain CIAT 652) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.288e-23
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 325
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGT++HPG  VG+GKDHT++AL  G V + + K +GR +V V PK
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTQWHPGSNVGLGKDHTIFALTAGNVDY-RTKANGRVYVSVMPK 84          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_PHOLL (50S ribosomal protein L27 OS=Photorhabdus luminescens subsp. laumondii GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.288e-23
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G+ VG G+DHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGSIIVRQRGTKFHAGNNVGCGRDHTLFALADGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_METRJ (50S ribosomal protein L27 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.288e-23
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ + LGVKKFG E VIPGNIIVRQRGT++HPG  VGMGKDHT++AL  G V+FE  +  GR +V V P
Sbjct:    2 AHKKAGGSSRNGRDSEGRRLGVKKFGSEAVIPGNIIVRQRGTKWHPGANVGMGKDHTIFALVPGHVRFETRR--GRAFVGVTP 82          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_MARAV2.514e-2363.8650S ribosomal protein L27 OS=Marinobacter aquaeole... [more]
RL27_SHEFN3.283e-2360.9850S ribosomal protein L27 OS=Shewanella frigidimar... [more]
RL27_METEP3.283e-2365.0650S ribosomal protein L27 OS=Methylobacterium exto... [more]
RL27_METC43.283e-2365.0650S ribosomal protein L27 OS=Methylobacterium chlo... [more]
RL27_RHILW4.288e-2363.1050S ribosomal protein L27 OS=Rhizobium leguminosar... [more]
RL27_RHIL34.288e-2363.1050S ribosomal protein L27 OS=Rhizobium leguminosar... [more]
RL27_RHIEC4.288e-2363.1050S ribosomal protein L27 OS=Rhizobium etli (strai... [more]
RL27_RHIE64.288e-2363.1050S ribosomal protein L27 OS=Rhizobium etli (strai... [more]
RL27_PHOLL4.288e-2360.9850S ribosomal protein L27 OS=Photorhabdus luminesc... [more]
RL27_METRJ4.288e-2363.8650S ribosomal protein L27 OS=Methylobacterium radi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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