BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8441 contig Csv1_Contig8441:179..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RM27_DICDI (Probable 39S ribosomal protein L27, mitochondrial OS=Dictyostelium discoideum GN=mrpl27 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 2
Query:   65 RRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKH-KLSGRKWVHVEPKEGHVLHPLYAN 358
            +R+ATKK+AGSTKNGR S+PKNLG+KK G + V PG II+RQRGT FHPG +VGMGKDHT+++   G V F K  K  G K    + +    + PLY N
Sbjct:   23 KRFATKKSAGSTKNGRTSQPKNLGLKKSGNQLVYPGEIIIRQRGTEFHPGTFVGMGKDHTIFSKTIGLVSFSKEPKFPGSK----KTRRFISVAPLYTN 117          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERPY (50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERPS (50S ribosomal protein L27 OS=Yersinia pseudotuberculosis GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERPP (50S ribosomal protein L27 OS=Yersinia pestis (strain Pestoides F) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERPN (50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERPG (50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERPE (50S ribosomal protein L27 OS=Yersinia pestis GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERPB (50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERPA (50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_YERP3 (50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpmA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+AL +G+VKFE      RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGINVGCGKDHTLFALADGKVKFEVKGPKNRKFISIE 83          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RM27_DICDI5.600e-2355.56Probable 39S ribosomal protein L27, mitochondrial ... [more]
RL27_YERPY5.600e-2362.2050S ribosomal protein L27 OS=Yersinia pseudotuberc... [more]
RL27_YERPS5.600e-2362.2050S ribosomal protein L27 OS=Yersinia pseudotuberc... [more]
RL27_YERPP5.600e-2362.2050S ribosomal protein L27 OS=Yersinia pestis (stra... [more]
RL27_YERPN5.600e-2362.2050S ribosomal protein L27 OS=Yersinia pestis bv. A... [more]
RL27_YERPG5.600e-2362.2050S ribosomal protein L27 OS=Yersinia pestis bv. A... [more]
RL27_YERPE5.600e-2362.2050S ribosomal protein L27 OS=Yersinia pestis GN=rp... [more]
RL27_YERPB5.600e-2362.2050S ribosomal protein L27 OS=Yersinia pseudotuberc... [more]
RL27_YERPA5.600e-2362.2050S ribosomal protein L27 OS=Yersinia pestis bv. A... [more]
RL27_YERP35.600e-2362.2050S ribosomal protein L27 OS=Yersinia pseudotuberc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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