BQ623078

Overview
NameBQ623078
Unique NameBQ623078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7145 contig Csv1_Contig7145:71..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 95/237 (40.08%), Postives = 112/237 (47.26%), Query Frame = 3
Query:   69 DFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSAN-KAQVVGWPPVRSYRKNAMAETAA---------------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            + K TEL LGLPG       E  A     TP+A +KR                                     D+   KP+A  KAQVVGWPPVRSYRK+ +  T                             FVKV MDGAPYLRK+DLK YK Y+EL +AL  MF  F+ G      +             N SD+  TYEDKDGD MLVGDVP+EMF+ +CKR+RIMKGSEA
Sbjct:    3 NLKATELRLGLPG------TEEEAAPPPSTPRAGSKRALAGEP-------------------------------DQAKIKPAAAAKAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAAV-------------NPSDFAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEA 189          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: AX22C_PHAAU (Auxin-induced protein 22C OS=Phaseolus aureus GN=AUX22C PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 90/218 (41.28%), Postives = 120/218 (55.05%), Query Frame = 3
Query:   48 EAIGLKMDFKETELCLGLPG-GGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRK-NAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            E +GL++    TEL LGLPG GG N  D+          K  NK+                          F +    N + ++D  K + N  QVVGWPPV SYRK N + E   +VKV MDGAP+LRK+DL  +K Y +L+ AL K F        G  G+ + + +++      ++++VP YEDKDGDWMLVGDVPWEMF +SCKR+RIMK S+A
Sbjct:    4 EDLGLEI----TELRLGLPGAGGENNTDK---------DKNKNKKRV------------------------FSDIEGENSSSEEDGKKETKN--QVVGWPPVCSYRKKNTVNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFF--------GCYGICEALKDAE------NAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDA 168          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: AX22A_PHAAU (Auxin-induced protein 22A OS=Phaseolus aureus GN=AUX22A PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 68/128 (53.12%), Postives = 88/128 (68.75%), Query Frame = 3
Query:  318 NKAQVVGWPPVRSYRKNAMAETAA--FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            NK QVVGWPPV SYRK      A+  +VKV MDGAP+LRK+DL  +K Y +L+ AL K+F        G  GM++ +        + + ++VP YEDKDGDWMLVGDVPWEMF++SCKR+RIMK ++A
Sbjct:   61 NKNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLF--------GCYGMVEALKN------VENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADA 174          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.769e-30
Identity = 73/139 (52.52%), Postives = 88/139 (63.31%), Query Frame = 3
Query:  282 KNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE-TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            +N      K    K QVVGWPPV SYRK  M E +  ++KV MDGAPYLRK+DL  +K Y EL+ AL K+F    +             E  L D  N  ++VP YEDKDGDWMLVGDVPWEMF++SCKR+RIMK S+A
Sbjct:   40 ENGGSGDRKSVDKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLCLHKGYLELALALEKLFDCCGI-------------EEALKDAENC-EHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDA 164          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 82/186 (44.09%), Postives = 99/186 (53.23%), Query Frame = 3
Query:  210 KLNLQSKES--SVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA----------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            K +L +K S  S D   +     +    HD D A P+  KAQVVGWPPVR+YR+N   + AA                      +VKV MDGAPYLRKVDLK  K Y+EL +AL  +F+        S G  D               +   YEDKDGD MLVGDVPWEMF+ SCK++RIMKGSEA
Sbjct:   49 KRSLGAKRSLESTDSMASGTGTSAAGDEHDDDTAAPA--KAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFTKCFSAT-ASDGCSD-------------GQFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 92/224 (41.07%), Postives = 121/224 (54.02%), Query Frame = 3
Query:   45 MEAIGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA-------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            ME  GL ++   TEL LGLPG     +D A         K   KR F E       +N+ S  S+ D  E+     S+  + +K    P+A K+QVVGWPPV SYRK    + A+       +VKV MDG PYLRK+DL + + Y +L+ AL K+F    +G     G              ++ +YV  YEDKDGDWML GDVPW MF++SCKR+RIMK S+A
Sbjct:    1 MEKEGLGLEI--TELRLGLPG-----RDVAE--------KMMKKRAFTE-------MNMTSSGSNSDQCES--GVVSSGGDAEKVNDSPAA-KSQVVGWPPVCSYRKKNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFALDKLFGFRGIGVALKDG--------------DNCEYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDA 185          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 92/256 (35.94%), Postives = 114/256 (44.53%), Query Frame = 3
Query:   51 AIGLKMD--FKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKN---------------------------------------AMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            A+G   D   K TEL LGLPG          A +L  TP+   +    E                   + N     +++  HD   A P   KAQVVGWPPVRSYRK+                                       A A   + VKV MDGAPYLRK+DL+ YK Y+EL +AL  MF  F                S   D  N S++  TY+DKDGD MLVGDVP++MF  +CK++RIMK SEA
Sbjct:    4 AVGYAADSLIKATELRLGLPG---------TADDLPSTPRGKKRAAAAE-------------------DNNANAAAADDDEHDAVEAAPPVAKAQVVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCF----------------SGAADGANPSEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEA 215          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 69/127 (54.33%), Postives = 87/127 (68.50%), Query Frame = 3
Query:  315 ANKAQVVGWPPVRSYR-KNAMAET-AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGS 689
            A K+QVVGWPPV SYR KN++  T +++VKV +DGA +LRK+DL+ YK YQ+L+ AL  +F  +          I+F       D L  S+ VP YEDKDGDWML GDVPWEMF+ SCKR+RIMK S
Sbjct:   49 AKKSQVVGWPPVCSYRRKNSLERTKSSYVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFGCY----------INFD------DTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRS 159          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA15_ARATH (Auxin-responsive protein IAA15 OS=Arabidopsis thaliana GN=IAA15 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.541e-28
Identity = 83/210 (39.52%), Postives = 104/210 (49.52%), Query Frame = 3
Query:   69 DFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAL 698
            D   TEL L LPG   N  +           K  NKR F ET  +DLKL                      + H+ +         Q+VGWPPV + RK    +   +VKV +DGA YLRKVDL  Y  Y +L  AL  MF          QG+I      ++ +L    ++V TYEDKDGD MLVGDVPW MFV+SCKRMR+MK  +A+
Sbjct:   15 DLGGTELTLALPGTPTNASEGPK--------KFGNKRRFLET--VDLKLG---------------------EAHENNYISSMVTNDQLVGWPPVATARKTVRRK---YVKVALDGAAYLRKVDLGMYDCYGQLFTALENMF----------QGIITIC---RVTELERKGEFVATYEDKDGDLMLVGDVPWMMFVESCKRMRLMKTGDAI 177          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA14_ORYSJ (Auxin-responsive protein IAA14 OS=Oryza sativa subsp. japonica GN=IAA14 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26
Identity = 70/159 (44.03%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  294 KDPAKPSANKAQVVGWPPVRSYRKNAM----AETAA---------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            +D A P A+K QVVGWPPV SYR++      + TAA                     +VKV MDGAPYLRKVDL+ Y  Y+EL DAL  +F  F+     S                 ++ +   YEDKDGD ML GDVPW+MF+ SCK++RIM+GSEA
Sbjct:   54 EDGASP-ASKVQVVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLRKVDLRMYGGYRELRDALDALFGCFSADASAS-----------------AAHFAVAYEDKDGDLMLAGDVPWDMFISSCKKLRIMRGSEA 194          
The following BLAST results are available for this feature:
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA31_ORYSJ1.017e-3240.08Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
AX22C_PHAAU1.734e-3241.28Auxin-induced protein 22C OS=Phaseolus aureus GN=A... [more]
AX22A_PHAAU7.287e-3153.13Auxin-induced protein 22A OS=Phaseolus aureus GN=A... [more]
IAA6_PEA2.769e-3052.52Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
IAA24_ORYSJ6.169e-3044.09Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA19_ARATH1.052e-2941.07Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
IAA12_ORYSJ1.052e-2935.94Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]
IAA5_ARATH3.061e-2954.33Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]
IAA15_ARATH7.541e-2839.52Auxin-responsive protein IAA15 OS=Arabidopsis thal... [more]
IAA14_ORYSJ1.857e-2644.03Auxin-responsive protein IAA14 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00169 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00169 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623078 ID=BQ623078; Name=BQ623078; organism=Citrus sinensis; type=EST; length=698bp
TGCCGGAAAAAGAAAATCTGTAAAGGAGTTGTTTGATAATTTGAATGGAA
GCTATTGGCCTGAAAATGGACTTCAAAGAGACTGAACTTTGCCTTGGATT
GCCCGGCGGTGGCAACAACAAAAAAGATGAAGCTGCTGCGTTAGAATTAA
CTCCAACTCCAAAGGCTAGCAACAAAAGAGGCTTCTGTGAGACTGCCGTA
ATTGATTTGAAACTCAATCTTCAGTCTAAGGAATCGTCAGTGGATCTGAA
TGAAAATTTCAAGAATCCTCCTTCCAACAACAAGAATCATGATAAGGATC
CCGCAAAGCCATCCGCCAATAAGGCACAAGTTGTGGGGTGGCCACCAGTG
CGATCCTATAGGAAGAATGCTATGGCTGAAACGGCAGCATTTGTGAAGGT
TTGCATGGACGGGGCTCCATATCTTCGCAAAGTGGATTTGAAGACGTATA
AGAGTTACCAAGAGCTTTCTGATGCATTGGCCAAGATGTTCAGTTCCTTC
ACCATGGGTAATTATGGATCACAAGGAATGATTGATTTTATGAACGAGAG
CAAGTTGATGGATCTTTTAAACAGCTCTGATTATGTGCCAACCTATGAAG
ACAAGGATGGCGACTGGATGCTCGTGGGTGATGTTCCTTGGGAGATGTTT
GTTGATTCATGCAAGCGTATGCGCATAATGAAAGGGTCAGAAGCATTG
back to top