BQ623078

Overview
NameBQ623078
Unique NameBQ623078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7145 contig Csv1_Contig7145:71..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 75/209 (35.89%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   81 TELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA----FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            TEL LGLPG   +        E++    +  K+      +    L+ +++ S V   E+   P                 K+Q VGWPPV SYR+    E A+    +VKV MDG PY+RK+DL +  SY  L   L  +F    +G            E K        +Y+  YEDKD DWMLVGDVPW+MF +SCKR+RI+K S+A
Sbjct:   11 TELRLGLPGDNYS--------EISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSVEDESLP---------------VVKSQAVGWPPVCSYRRKKNNEEASKAIGYVKVSMDGVPYMRKIDLGSSNSYINLVTVLENLFGCLGIG---------VAKEGK------KCEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDA 181          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 67/155 (43.23%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  231 ESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            +  V+L E    PP  +           A + +  G PP  S    +M + A FVKV MDG PYLRKVD+  Y  Y EL +AL  MF   T+G               LMD     ++   YED DGDWMLVGDVPWEMFV SCKRMR+M+  EA
Sbjct:    6 DDGVELTELTLGPPGASARR--------ARRGRKNGHPPPSS----SMIQAAYFVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIG---------------LMDGYGEWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEA 133          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 64/165 (38.79%), Postives = 84/165 (50.91%), Query Frame = 3
Query:  303 AKPSANKAQVVGWPPVRSYRKNAMAETAA----------------------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            + P  + +QVVGWPP+ S+R N++    A                                  F+KV MDG    RKVDL  + SY+ L+  L  MF     G  G      F    +L+D   SS++V TYEDK+GDWMLVGDVPW MF++S KR+R+MK SEA
Sbjct:   68 SSPPRSSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQ--FTKPLRLLD--GSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEA 228          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 65/157 (41.40%), Postives = 83/157 (52.87%), Query Frame = 3
Query:  312 SANKAQVVGWPPVRSYRKNAMAETAA-----------------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            +A   QVVGWPP+R+YR N+M   A                              FVKV MDG P  RK+DL  +K Y+ LS+ L +MF    +G+   +         K++    SS  V TYEDK+GDWMLVGDVPW MF+ S +R+RIMK SEA
Sbjct:   83 AATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPD-GSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEA 238          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  330 VVGWPPVRSYRKNAM---------------------------------AETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            VVGWPP+R +R N++                                    A +VKV MDG    RKVDL  ++SY+ L+ AL  MF+  ++G   S       N  KL+D  NS++Y  TYED+DGDWMLVGDVPWEMFV S KR+RIM+ S+A
Sbjct:  112 VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNT----NSLKLLD--NSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDA 260          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  330 VVGWPPVRSYRKNAM---------------------------------AETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            VVGWPP+R +R N++                                    A +VKV MDG    RKVDL  ++SY+ L+ AL  MF+  ++G   S       N  KL+D  NS++Y  TYED+DGDWMLVGDVPWEMFV S KR+RIM+ S+A
Sbjct:  112 VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNT----NSLKLLD--NSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDA 260          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 79/237 (33.33%), Postives = 113/237 (47.68%), Query Frame = 3
Query:   75 KETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA-----------------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESK-LMDLLNSS-DYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSE 692
            K+ EL LG PGG  +++D +A        K  N      T + ++K   + K        +F   PSN        ++       VVGWPPVRS+RKN  + +++                             FVK+ MDG P  RKVDL  Y SY++LS  + K+F          + + D   E K ++ LL+   ++  TYED +GD MLVGDVPW+MFV S KR+R++K SE
Sbjct:   36 KKLELRLGPPGG--DEEDHSAI-------KKKN------TEIRNIKKETEDKSFHCFNGNHFS--PSNKTTSVPHISQKRTAPGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQ---RDISDGQGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSE 252          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 81/242 (33.47%), Postives = 103/242 (42.56%), Query Frame = 3
Query:   78 ETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA------------------------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 695
            E EL LGL  GG   K+    L     P   +KR               S ESS   +    +PP ++               QVVGWPP+  +R N++    A                                    FVKV MDG    RKVD++ + SY+ L+  L +MF       +G  G         L  L  SSD+V TYEDK+GDWMLVGDVPW MF++S KR+RIM  SEA
Sbjct:   19 ELELGLGLSLGGGAWKERGRILTAKDFPSVGSKR---------------SAESS---SHQGASPPRSS---------------QVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMF-------FGMTGTTCREKVKPLRLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEA 220          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 74/205 (36.10%), Postives = 93/205 (45.37%), Query Frame = 3
Query:  207 LKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQV-VGWPPVRSYRKNAM---------------------------------------AETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMF----SSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGS 689
            ++ +L S  SS+      K      ++ D  PA  S    QV VGWPP+R+YR N++                                       + T+  VKV MDG    RKVDL    SY  L   L  MF    S  T  N      I     SKL+D   SS+Y+ TY+DKDGDWMLVGDVPW+MF+ S  R+RIMK S
Sbjct:   58 VRSSLSSSSSSLTRESGTK------RSADSSPAAASNATRQVAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKSVVVAAKNDDACFIKSSRTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSNTQGYKTIKETCTSKLLD--GSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTS 254          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 82/252 (32.54%), Postives = 114/252 (45.24%), Query Frame = 3
Query:   75 KETELCLGLPGGG----NNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKA----------------QVVGWPPVRSYRKN-----------------AMAET---AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYG--SQGMIDFMNE----SKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSE 692
            K  EL LGLPGGG       K       +     A +  G  +++++ L  +     S    N+N K  P   + H   P   + N A                 VVGWPPVR++R+N                 A AE    A F+K+ MDG P  RK+DL  + SY++LS A+ K+F           + G  D   E    S L+D   + +Y   YED +GD +LVGDVPW MFV S KR+R++K S+
Sbjct:   39 KTLELSLGLPGGGWRAACRDKGTTTKHSIAAAAAADDDDGD-KSSMLSLGYSTLVSHSQGKANKN-KGSPEEEEAH---PPPATGNNALASNNNGCFQTRSPSTPVVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLD--GTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283          
The following BLAST results are available for this feature:
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA6_ARATH1.331e-2435.89Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA26_ORYSJ2.965e-2443.23Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
IAA13_ARATH5.058e-2438.79Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA11_ARATH6.606e-2441.40Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA10_ORYSJ3.279e-2341.94Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA10_ORYSI3.279e-2341.94Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA26_ARATH1.627e-2233.33Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA12_ARATH3.625e-2233.47Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA10_ARATH1.166e-2036.10Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA7_ORYSJ1.523e-2032.54Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00169 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00169 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623078 ID=BQ623078; Name=BQ623078; organism=Citrus sinensis; type=EST; length=698bp
TGCCGGAAAAAGAAAATCTGTAAAGGAGTTGTTTGATAATTTGAATGGAA
GCTATTGGCCTGAAAATGGACTTCAAAGAGACTGAACTTTGCCTTGGATT
GCCCGGCGGTGGCAACAACAAAAAAGATGAAGCTGCTGCGTTAGAATTAA
CTCCAACTCCAAAGGCTAGCAACAAAAGAGGCTTCTGTGAGACTGCCGTA
ATTGATTTGAAACTCAATCTTCAGTCTAAGGAATCGTCAGTGGATCTGAA
TGAAAATTTCAAGAATCCTCCTTCCAACAACAAGAATCATGATAAGGATC
CCGCAAAGCCATCCGCCAATAAGGCACAAGTTGTGGGGTGGCCACCAGTG
CGATCCTATAGGAAGAATGCTATGGCTGAAACGGCAGCATTTGTGAAGGT
TTGCATGGACGGGGCTCCATATCTTCGCAAAGTGGATTTGAAGACGTATA
AGAGTTACCAAGAGCTTTCTGATGCATTGGCCAAGATGTTCAGTTCCTTC
ACCATGGGTAATTATGGATCACAAGGAATGATTGATTTTATGAACGAGAG
CAAGTTGATGGATCTTTTAAACAGCTCTGATTATGTGCCAACCTATGAAG
ACAAGGATGGCGACTGGATGCTCGTGGGTGATGTTCCTTGGGAGATGTTT
GTTGATTCATGCAAGCGTATGCGCATAATGAAAGGGTCAGAAGCATTG
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