BQ623078

Overview
NameBQ623078
Unique NameBQ623078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7145 contig Csv1_Contig7145:71..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 53/143 (37.06%), Postives = 69/143 (48.25%), Query Frame = 3
Query:  312 SANKAQVVGWPPVRSYRKNAMAETAA--------------------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWE 644
            +A+ AQ+VGWPPVR++RKN      A                                FVKV ++G    RK+DLK ++SY  LS AL  MF  F      S G+    NE + M+  +   YV  YED +GD MLVGDVPW+
Sbjct:   35 AASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-----SDGIATRDNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPWD 172          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSJ (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 64/208 (30.77%), Postives = 96/208 (46.15%), Query Frame = 3
Query:  105 GGG---NNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMK 683
            GGG   ++  D +    L+ T  A+  R    T   DL+L L    SS   +   +   +     D  P+ P  ++     WPP++ + ++A+ + +A            FVKV M+G P  RK+DL     Y  L   L  MF   T   Y        + E         + +V TYED+DGDWM+VGDVPWE+F+ S K++RI +
Sbjct:    6 GGGMSPSSSMDSSTHPALSTTSSAATARRDLST---DLRLGLSLSTSSS--SSLLQAAAAAAAADDSIPSTPRNSQVHA-DWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYAD------VMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSI (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 64/208 (30.77%), Postives = 96/208 (46.15%), Query Frame = 3
Query:  105 GGG---NNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAA------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMK 683
            GGG   ++  D +    L+ T  A+  R    T   DL+L L    SS   +   +   +     D  P+ P  ++     WPP++ + ++A+ + +A            FVKV M+G P  RK+DL     Y  L   L  MF   T   Y        + E         + +V TYED+DGDWM+VGDVPWE+F+ S K++RI +
Sbjct:    6 GGGMSPSSSMDSSTHPALSTTSSAATARRDLST---DLRLGLSLSTSSS--SSLLQAAAAAAAADDSIPSTPRNSQVHA-DWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYAD------VMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 3
Query:  279 NKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAF-VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGS 689
            N  +    A P+   A+ V    V    +N      +F VKV M+G P  RK+DL +   Y++L   L  MF++  +              ++  D+ N   +V TY DK+GDWM+VGDVPWEMF+ + +R++I + +
Sbjct:   50 NGGYGYSVAAPAVEDAEYVA--AVEEEEENECNSVGSFYVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILW-------------AEEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  390 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMF-SSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSE 692
            FVKV M+G P  RK+DL     Y+ L   LA MF +S T  +   Q  +  M  +K+  +L       TYED++GDWM+ GDVPWE+F+ S KR+RI +  +
Sbjct:  105 FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHVL-------TYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  390 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMK 683
            +VKV M+G P  RK+DL +   Y +L   L  MF++  +              ++  D+ +   +V TY DK+GDWM+VGDVPWEMF+ S +R++I +
Sbjct:   84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILW-------------AEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISR 168          
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Match: IAA27_ORYSJ (Auxin-responsive protein IAA27 OS=Oryza sativa subsp. japonica GN=IAA27 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 47/121 (38.84%), Postives = 64/121 (52.89%), Query Frame = 3
Query:  342 PPVRSYRKNAMAETAA------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESK-LMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMK 683
            PP RS    A A T A      F KV MDG    RK++L+ +++Y  L   L KM  +F           D+ + +K   D   S +++  YED +GD MLVGDVPWE+F+ S KR+ I K
Sbjct:   10 PPPRS----AAAATEASRTLNMFAKVHMDGYKVGRKINLRAHRNYDSLRRVLTKMTHNFFCP-------ADYSSTNKGEEDCAKSDEFIFLYEDFEGDRMLVGDVPWELFLASAKRLYIAK 119          
The following BLAST results are available for this feature:
BLAST of BQ623078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA22_ORYSJ6.621e-1637.06Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA4_ORYSJ5.605e-1530.77Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA4_ORYSI5.605e-1530.77Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA20_ARATH1.381e-1332.61Auxin-responsive protein IAA20 OS=Arabidopsis thal... [more]
IAA8_ORYSJ1.803e-1342.16Auxin-responsive protein IAA8 OS=Oryza sativa subs... [more]
IAA30_ARATH6.852e-1337.76Auxin-responsive protein IAA30 OS=Arabidopsis thal... [more]
IAA27_ORYSJ3.760e-1138.84Auxin-responsive protein IAA27 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00169 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00169 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623078 ID=BQ623078; Name=BQ623078; organism=Citrus sinensis; type=EST; length=698bp
TGCCGGAAAAAGAAAATCTGTAAAGGAGTTGTTTGATAATTTGAATGGAA
GCTATTGGCCTGAAAATGGACTTCAAAGAGACTGAACTTTGCCTTGGATT
GCCCGGCGGTGGCAACAACAAAAAAGATGAAGCTGCTGCGTTAGAATTAA
CTCCAACTCCAAAGGCTAGCAACAAAAGAGGCTTCTGTGAGACTGCCGTA
ATTGATTTGAAACTCAATCTTCAGTCTAAGGAATCGTCAGTGGATCTGAA
TGAAAATTTCAAGAATCCTCCTTCCAACAACAAGAATCATGATAAGGATC
CCGCAAAGCCATCCGCCAATAAGGCACAAGTTGTGGGGTGGCCACCAGTG
CGATCCTATAGGAAGAATGCTATGGCTGAAACGGCAGCATTTGTGAAGGT
TTGCATGGACGGGGCTCCATATCTTCGCAAAGTGGATTTGAAGACGTATA
AGAGTTACCAAGAGCTTTCTGATGCATTGGCCAAGATGTTCAGTTCCTTC
ACCATGGGTAATTATGGATCACAAGGAATGATTGATTTTATGAACGAGAG
CAAGTTGATGGATCTTTTAAACAGCTCTGATTATGTGCCAACCTATGAAG
ACAAGGATGGCGACTGGATGCTCGTGGGTGATGTTCCTTGGGAGATGTTT
GTTGATTCATGCAAGCGTATGCGCATAATGAAAGGGTCAGAAGCATTG
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