BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACSS (ATP synthase subunit beta OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=atpD PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 71/225 (31.56%), Postives = 116/225 (51.56%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+++T +V    N    AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GSVT + A+  P  D++DP  + T + +     LD+KL Q+  +P+VN           LES     DP+ +      + ++ + VLQR  +L +I+ ++G D L++ +KI +  A+ + + +L+QN
Sbjct:  202 VLEKTAMVFGQMNESPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLDRKLTQQGIYPAVN----------PLESSSSALDPEIVGQEHYEVASEVQHVLQRYRELQDIISILGMDELSDDEKIIVARARRI-QFFLSQN 408          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACGA (ATP synthase subunit beta OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=atpD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T + AV  P  D++DP  + T + +     L+++L ++  +P+V+           LES     DP+ +      +  + + +LQR  +L +I+ ++G D L++ +K+ +E A+ + + +L+QN F
Sbjct:  202 VLSKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGLDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSITSIQAVYVPADDYTDPAPATTFAHLDATTNLERRLVEQGIYPAVD----------PLESTSSALDPEVVGEEHYQVAVQVQHILQRYQELQDIISVLGMDELSDDEKLIVERARKI-QFFLSQNFF 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACAC (ATP synthase subunit beta OS=Lactobacillus acidophilus GN=atpD PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 69/227 (30.40%), Postives = 116/227 (51.10%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +T +V    N P  AR     TG+T+AEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T + AV  P  D++DP  S T + +     L++ L ++  +P+V+           LES     DP+ +      + T+ + VLQR  +L +I+ ++G D L++ +K+ +  A+ + + +L+QN F
Sbjct:  202 VLSKTAMVFGQMNEPPGARMRVALTGLTLAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSITSIQAVYVPADDYTDPAPSTTFAYLDATTNLERSLVEQGIYPAVD----------PLESSSSALDPEVVGQEHYEVATRVQHVLQRYHELQDIISVLGMDELSDEEKLIVARARKV-QFFLSQNFF 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_PROAC (ATP synthase subunit beta OS=Propionibacterium acnes GN=atpD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 70/223 (31.39%), Postives = 118/223 (52.91%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFT 667
            V+K T LV    + P   R     TG+T+AEYFRD+   +V +  D+  R+++A  E+S  L  MP+  GY   LA  +    ER           R  S+T + AV  P  D++DP  + T + +     L +++A R  +P+V+ L S S+    L    E +D       T+ +++LQR  +L +I+ ++G D L+E DK+T+  A+ +++ +L+QN +T
Sbjct:  218 VLKDTALVFGQMDEPPGTRLRIALTGLTMAEYFRDVQNQDVLLFIDNIFRFSQAGSEVSTLLGRMPSAVGYQPNLADEMGQLQERITST-------RGHSITSMQAVYVPADDYTDPAPATTFAHLDATTELSREIASRGLYPAVDPLTSTSRILDPLYVGQEHYDT-----ATQVKQILQRNKELQDIIAILGVDELSEEDKVTVARARRIQQ-FLSQNTYT 427          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACH4 (ATP synthase subunit beta OS=Lactobacillus helveticus (strain DPC 4571) GN=atpD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 69/227 (30.40%), Postives = 116/227 (51.10%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +T +V    N P  AR     TG+T+AEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T + AV  P  D++DP  S T + +     L++ L ++  +P+V+           LES     DP+ +      + T+ + VLQR  +L +I+ ++G D L++ +K+ +  A+ + + +L+QN F
Sbjct:  202 VLSKTAMVFGQMNEPPGARMRVALTGLTLAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSITSIQAVYVPADDYTDPAPSTTFAHLDATTNLERSLVEQGIYPAVD----------PLESSSSALDPEVVGKEHYEVATRVQHVLQRYHELQDIISVLGMDELSDEEKLIVARARKV-QFFLSQNFF 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_MYCGA (ATP synthase subunit beta OS=Mycoplasma gallisepticum GN=atpD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 75/227 (33.04%), Postives = 116/227 (51.10%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIR-----TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +T LV    N P  AR     TG+T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  + S  ER    K       +GS+T V A+  P  D +DP  S T + +     LD+ +A    FP+VN L S S+            DP  + I+      K + +LQ+  +L +I+ ++G D L+E DK+T+  A+ +R ++L+Q  F
Sbjct:  205 VIDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDVNNQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAEEMGSLQERITSTK-------SGSITSVQAIYVPADDLTDPAPSTTFTHLDAKTVLDRNIASLGIFPAVNPLDSTSRL----------LDPSVVGIQHYQTARKVQMILQKFLELQDIIAILGIDELSEEDKLTVSRARKIR-NFLSQPFF 413          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACS1 (ATP synthase subunit beta OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=atpD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 69/220 (31.36%), Postives = 115/220 (52.27%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+++T +V    N P  AR     TG+T+AEYFRD+ G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GSVT + AV  P  D++DP  + T + +     L++ L Q+  +P+V+ L S S   T      E    +   + T+ + VLQR  +L +I+ ++G D L++ +KI +  A+ + + +L+QN
Sbjct:  202 VLEKTAMVFGQMNEPPGARMRVALTGLTLAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAVYVPADDYTDPAPATTFAHLDATTNLERSLTQQGIYPAVDPLASTSSALTP-----EIVGEEHYEVATEVQHVLQRYRELQDIISILGMDELSDEEKIIVARARRI-QFFLSQN 408          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACDB (ATP synthase subunit beta OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=atpD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 67/227 (29.52%), Postives = 117/227 (51.54%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GS+T + AV  P  D++DP  + T + +     L++ L ++  +P+V+           LES     DP+ +     ++ T+ + +LQR  +L +I+ ++G D L++ +K+ +  A+ + + +L+QN F
Sbjct:  202 VLDKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTK-------KGSITSIQAVYVPADDYTDPAPATTFAYLDATTNLERSLVEQGIYPAVD----------PLESTSSALDPEIVGQEHYDVATRVQHILQRYRELQDIISVLGMDELSDEEKLIVARARRI-QFFLSQNFF 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_HELPJ (ATP synthase subunit beta OS=Helicobacter pylori J99 GN=atpD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 71/222 (31.98%), Postives = 115/222 (51.80%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +  L     N P  AR    +TG+T+AEYFRD  G +V M  D+  R+A++  E+S  L  +P+  GY   LA  +    ER    K        GS+T V AV  P  D +DP  ++  + +     L++K+A++  +P+V+ L S S+  +      +        I T  ++VLQ+  DL +I+ ++G D L+E DK T+E A+ + E +L+Q  F
Sbjct:  204 VLDKVALCYGQMNEPPGARNRIAFTGLTMAEYFRDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTK-------NGSITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSP-----QMIGEKHYEIATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKI-EKFLSQPFF 412          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_HELPG (ATP synthase subunit beta OS=Helicobacter pylori (strain G27) GN=atpD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 71/222 (31.98%), Postives = 115/222 (51.80%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +  L     N P  AR    +TG+T+AEYFRD  G +V M  D+  R+A++  E+S  L  +P+  GY   LA  +    ER    K        GS+T V AV  P  D +DP  ++  + +     L++K+A++  +P+V+ L S S+  +      +        I T  ++VLQ+  DL +I+ ++G D L+E DK T+E A+ + E +L+Q  F
Sbjct:  204 VLDKVALCYGQMNEPPGARNRIAFTGLTMAEYFRDEKGLDVLMFIDNIFRYAQSGAEMSALLGRIPSAVGYQPTLAGEMGKLQERIASTK-------NGSITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSP-----QMIGEKHYEIATGIQQVLQKYKDLQDIIAILGLDELSEEDKKTVERARKI-EKFLSQPFF 412          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_LACSS2.011e-2331.56ATP synthase subunit beta OS=Lactobacillus sakei s... [more]
ATPB_LACGA3.429e-2329.96ATP synthase subunit beta OS=Lactobacillus gasseri... [more]
ATPB_LACAC4.479e-2330.40ATP synthase subunit beta OS=Lactobacillus acidoph... [more]
ATPB_PROAC7.640e-2331.39ATP synthase subunit beta OS=Propionibacterium acn... [more]
ATPB_LACH47.640e-2330.40ATP synthase subunit beta OS=Lactobacillus helveti... [more]
ATPB_MYCGA1.702e-2233.04ATP synthase subunit beta OS=Mycoplasma gallisepti... [more]
ATPB_LACS11.702e-2231.36ATP synthase subunit beta OS=Lactobacillus salivar... [more]
ATPB_LACDB1.702e-2229.52ATP synthase subunit beta OS=Lactobacillus delbrue... [more]
ATPB_HELPJ1.702e-2231.98ATP synthase subunit beta OS=Helicobacter pylori J... [more]
ATPB_HELPG1.702e-2231.98ATP synthase subunit beta OS=Helicobacter pylori (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
back to top