BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACCB (ATP synthase subunit beta OS=Lactobacillus casei (strain BL23) GN=atpD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.903e-22
Identity = 67/220 (30.45%), Postives = 116/220 (52.73%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V++ T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GSVT + A+  P  D++DP  + T + +     L+++L ++  +P+V+ L S S   T      E    +   + T+ ++VLQR  +L +I+ ++G D L++ +K+ +  A+ + + +L+QN
Sbjct:  204 VLENTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERRLTEQGIYPAVDPLESSSSALTP-----EIVGDEHYKVATEVQQVLQRYRELQDIISILGMDELSDEEKVVVARARRI-QFFLSQN 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACC3 (ATP synthase subunit beta OS=Lactobacillus casei (strain ATCC 334) GN=atpD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.903e-22
Identity = 67/220 (30.45%), Postives = 116/220 (52.73%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V++ T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GSVT + A+  P  D++DP  + T + +     L+++L ++  +P+V+ L S S   T      E    +   + T+ ++VLQR  +L +I+ ++G D L++ +K+ +  A+ + + +L+QN
Sbjct:  204 VLENTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERRLTEQGIYPAVDPLESSSSALTP-----EIVGDEHYKVATEVQQVLQRYRELQDIISILGMDELSDEEKVVVARARRI-QFFLSQN 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACCA (ATP synthase subunit beta OS=Lactobacillus casei GN=atpD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 68/220 (30.91%), Postives = 115/220 (52.27%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            VM+ T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GSVT + A+  P  D++DP    T + +     L+++L ++  +P+V+ L S S   T      E    +   + T+ ++VLQR  +L +I+ ++G D L++ +K+ +  A+ + + +L+QN
Sbjct:  204 VMENTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPRTTFAHLDATTNLERRLTEQGIYPAVDPLESSSSALTP-----EIVGEEHYKVATEVQQVLQRYRELQDIISILGMDELSDEEKVIVARARRV-QFFLSQN 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACBA (ATP synthase subunit beta OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=atpD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 71/230 (30.87%), Postives = 118/230 (51.30%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAK----LLREDYLAQNAFTPYD 676
            V+K+T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GS+T + AV  P  D++DP  + T + +     L++ L Q+  +P+V+ L S    STAL    E    +  ++ T+ + VLQR  +L +I+ ++G D L++ ++  ++ A+     L + +   + FT  D
Sbjct:  202 VLKQTAMVYGQMNEPPGARMRVALTGLTIAEYFRDVKGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTK-------KGSITSIQAVYVPADDYTDPAPATTFAHLDATTNLERALTQQGIYPAVDPLAS---TSTALAP--EIIGQEHYDVATEVQRVLQRYHELQDIISILGMDELSDEEQTIVQRARRIQFFLSQPFSVASQFTGMD 419          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CLONN (ATP synthase subunit beta OS=Clostridium novyi (strain NT) GN=atpD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 70/227 (30.84%), Postives = 115/227 (50.66%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            V+ +T LV    N P  AR     TG+T+AEYFRD G NV +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K        GS+T V AV  P  D +DP  + T + +     L + +A+   +P+V+ L S S+         E +D     +    + +L+R  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  FT  ++F
Sbjct:  202 VINKTALVFGQMNEPPGARMRVALTGLTMAEYFRDQGQNVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITSTK-------HGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLESTSRILDPRVIGQEHYD-----VAINVKHILERYKELQDIIAILGVDELSEEDKLVVSRARKVQR-FLSQ-PFTVAEQF 414          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_OCEIH (ATP synthase subunit beta OS=Oceanobacillus iheyensis GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 68/220 (30.91%), Postives = 117/220 (53.18%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+ +T +V    N P  AR     TG+T+AEYFRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER             GSVT + A+  P  D++DP  + T + +     LD+KL+++  +P+V+ L S S+   AL+   E    +   + T+ ++ LQ+  +L +I+ ++G D L++ DK+ +  A+ + + +L+QN
Sbjct:  201 VIAKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTD-------KGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLDRKLSEQGIYPAVDPLESTSR---ALDP--EVVGKEHYEVATEVQQTLQKYRELQDIIAILGMDELSDEDKLVVARARRI-QFFLSQN 407          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_NITSB (ATP synthase subunit beta OS=Nitratiruptor sp. (strain SB155-2) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 70/227 (30.84%), Postives = 116/227 (51.10%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +  L     N P  AR     TG+T+AEYFRD MG +V M  D+  R+A+A  E+S  L  +P+  GY   LA+ +    ER    K        GS+T + AV  P  D +DP  ++  + +     L++++A++  +P+V+           L+S     DP+ +      +    + VLQ+  DL +I+ ++G D L+E DK+T+E A+ + E +L+Q  F
Sbjct:  204 VLDKVALCYGQMNEPPGARNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRYAQAGAEMSALLGRIPSAVGYQPTLASEMGRLQERITSTK-------KGSITSIQAVYVPADDLTDPAPASVFAHLDATTVLNRRIAEKGIYPAVD----------PLDSTSRMLDPNIVGEEHYKVARGVQAVLQKYKDLQDIIAILGMDELSEEDKLTVERARKI-ERFLSQPFF 412          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACLS (ATP synthase subunit beta OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 72/247 (29.15%), Postives = 122/247 (49.39%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN------------AFTPYDKFCPFYKSV 703
            V+++T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GSVT + A+  P  D++DP  +   + +     L+++L Q   +P+V+ L S S+  T      E    +   +  + + VLQR  +L +I+ ++G D L++ +KI +  A+ + + +L+QN            ++ P DK    +K +
Sbjct:  205 VIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPATAFAHLDATTNLERRLTQMGIYPAVDPLASSSRAITP-----EIVGEEHYEVAMEVQRVLQRYKELQDIIAILGMDELSDDEKILVGRARRI-QFFLSQNFHVAEQFTGQPGSYVPIDKTVHDFKEI 438          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACLM (ATP synthase subunit beta OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=atpD PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 72/247 (29.15%), Postives = 122/247 (49.39%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN------------AFTPYDKFCPFYKSV 703
            V+++T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GSVT + A+  P  D++DP  +   + +     L+++L Q   +P+V+ L S S+  T      E    +   +  + + VLQR  +L +I+ ++G D L++ +KI +  A+ + + +L+QN            ++ P DK    +K +
Sbjct:  205 VIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPATAFAHLDATTNLERRLTQMGIYPAVDPLASSSRALTP-----EIVGEEHYEVAMEVQRVLQRYKELQDIIAILGMDELSDDEKILVGRARRI-QFFLSQNFHVAEQFTGQPGSYVPIDKTVHDFKEI 438          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LACLA (ATP synthase subunit beta OS=Lactococcus lactis subsp. lactis GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 72/247 (29.15%), Postives = 122/247 (49.39%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN------------AFTPYDKFCPFYKSV 703
            V+++T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GSVT + A+  P  D++DP  +   + +     L+++L Q   +P+V+ L S S+  T      E    +   +  + + VLQR  +L +I+ ++G D L++ +KI +  A+ + + +L+QN            ++ P DK    +K +
Sbjct:  205 VIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPATAFAHLDATTNLERRLTQMGIYPAVDPLASSSRALTP-----EIVGEEHYEVAMEVQRVLQRYKELQDIIAILGMDELSDDEKILVGRARRI-QFFLSQNFHVAEQFTGQPGSYVPIDKTVHDFKEI 438          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_LACCB2.903e-2230.45ATP synthase subunit beta OS=Lactobacillus casei (... [more]
ATPB_LACC32.903e-2230.45ATP synthase subunit beta OS=Lactobacillus casei (... [more]
ATPB_LACCA3.792e-2230.91ATP synthase subunit beta OS=Lactobacillus casei G... [more]
ATPB_LACBA3.792e-2230.87ATP synthase subunit beta OS=Lactobacillus brevis ... [more]
ATPB_CLONN3.792e-2230.84ATP synthase subunit beta OS=Clostridium novyi (st... [more]
ATPB_OCEIH4.952e-2230.91ATP synthase subunit beta OS=Oceanobacillus iheyen... [more]
ATPB_NITSB4.952e-2230.84ATP synthase subunit beta OS=Nitratiruptor sp. (st... [more]
ATPB_LACLS4.952e-2229.15ATP synthase subunit beta OS=Lactococcus lactis su... [more]
ATPB_LACLM4.952e-2229.15ATP synthase subunit beta OS=Lactococcus lactis su... [more]
ATPB_LACLA4.952e-2229.15ATP synthase subunit beta OS=Lactococcus lactis su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
back to top