BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_GEOTH (ATP synthase subunit beta OS=Geobacillus thermoleovorans GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 67/220 (30.45%), Postives = 112/220 (50.91%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+ +T +V    N P  AR     TG+T+AEYFRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER             GS+T + A+  P  D++DP  + T S +     L++KLA+   +P+V+ L S S+         E    +   +  K ++ LQR  +L +I+ ++G D L++ DK+ +  A+ + + +L+QN
Sbjct:  207 VISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTA-------KGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLASTSRALAP-----EIVGEEHYQVARKVQQTLQRYKELQDIIAILGMDELSDEDKLVVHRARRI-QFFLSQN 413          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_GEOKA (ATP synthase subunit beta OS=Geobacillus kaustophilus GN=atpD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 67/220 (30.45%), Postives = 112/220 (50.91%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+ +T +V    N P  AR     TG+T+AEYFRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER             GS+T + A+  P  D++DP  + T S +     L++KLA+   +P+V+ L S S+         E    +   +  K ++ LQR  +L +I+ ++G D L++ DK+ +  A+ + + +L+QN
Sbjct:  207 VISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTA-------KGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLASTSRALAP-----EIVGEEHYQVARKVQQTLQRYKELQDIIAILGMDELSDEDKLVVHRARRI-QFFLSQN 413          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_STRA5 (ATP synthase subunit beta OS=Streptococcus agalactiae serotype V GN=atpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 69/220 (31.36%), Postives = 114/220 (51.82%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+++T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GSVT + A+  P  D++DP  +   + +     L++KL Q   +P+V+ L S S+  T      E    +   + T+ + VLQR  +L +I+ ++G D L++ +K  +  A+ + + +L+QN
Sbjct:  204 VIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQMGIYPAVDPLASSSRALTP-----EIVGDEHYEVATEVQRVLQRYRELQDIIAILGMDELSDEEKTLVGRARRI-QFFLSQN 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_STRA3 (ATP synthase subunit beta OS=Streptococcus agalactiae serotype III GN=atpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 69/220 (31.36%), Postives = 114/220 (51.82%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+++T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GSVT + A+  P  D++DP  +   + +     L++KL Q   +P+V+ L S S+  T      E    +   + T+ + VLQR  +L +I+ ++G D L++ +K  +  A+ + + +L+QN
Sbjct:  204 VIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQMGIYPAVDPLASSSRALTP-----EIVGDEHYEVATEVQRVLQRYRELQDIIAILGMDELSDEEKTLVGRARRI-QFFLSQN 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_STRA1 (ATP synthase subunit beta OS=Streptococcus agalactiae serotype Ia GN=atpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 69/220 (31.36%), Postives = 114/220 (51.82%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+++T +V    N P  AR     TG+TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GSVT + A+  P  D++DP  +   + +     L++KL Q   +P+V+ L S S+  T      E    +   + T+ + VLQR  +L +I+ ++G D L++ +K  +  A+ + + +L+QN
Sbjct:  204 VIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQMGIYPAVDPLASSSRALTP-----EIVGDEHYEVATEVQRVLQRYRELQDIIAILGMDELSDEEKTLVGRARRI-QFFLSQN 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CLOBB (ATP synthase subunit beta OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 71/232 (30.60%), Postives = 115/232 (49.57%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            V+ +T LV    N P  AR     TG+T+AEYFRD G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K        GS+T V AV  P  D +DP  + T S +     L + + +   +P+V+           LES     DP  +     N+ TK + +L+R  +L +I+ ++G D L++ DK  +  A+ ++  +L+Q  FT  ++F
Sbjct:  201 VIDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDKGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITSTK-------NGSITSVQAVYVPADDLTDPAPATTFSHLDATTVLSRSIVELGIYPAVD----------PLESSSRILDPRLVGEEHYNVATKVKNILERYKELQDIIAILGVDELSDEDKAVVSRARKVQR-FLSQ-PFTVGEQF 413          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CLOBA (ATP synthase subunit beta OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 71/232 (30.60%), Postives = 115/232 (49.57%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            V+ +T LV    N P  AR     TG+T+AEYFRD G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K        GS+T V AV  P  D +DP  + T S +     L + + +   +P+V+           LES     DP  +     N+ TK + +L+R  +L +I+ ++G D L++ DK  +  A+ ++  +L+Q  FT  ++F
Sbjct:  201 VIDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDKGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITSTK-------NGSITSVQAVYVPADDLTDPAPATTFSHLDATTVLSRSIVELGIYPAVD----------PLESSSRILDPRLVGEEHYNVATKVKNILERYKELQDIIAILGVDELSDEDKAVVSRARKVQR-FLSQ-PFTVGEQF 413          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CHLAD (ATP synthase subunit beta OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 70/244 (28.69%), Postives = 117/244 (47.95%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLR----EDYLAQNAFTPY-DKFCPFYKSV 703
            V  +T +V    N P  AR     T +T+AEYFRD G ++ +  D+  R+ +A  E+S  L  MP+  GY   L   +    ER    K        GS+T + AV  P  D++DP  +   S +     L++ +A+R  FP+V+ L S S+            DP+ +      +  + + VLQR  DL +I+ ++G + L++ DK+T++ A+ +     + +     FT    K+ P  K+V
Sbjct:  208 VFDKTIMVFGQMNEPPGARLRVGLTALTMAEYFRDQGRDILLFIDNIFRFVQAGSEVSSLLGRMPSQVGYQPTLGTEMGELQERITSTK-------RGSITSMQAVYVPADDYTDPAPATVFSHLDATISLERSIAERAIFPAVDPLASTSRI----------LDPNIVGEEHYRVAQEVKRVLQRYKDLKDIIAILGMEELSDEDKLTVQRARKIELFFSQPFTVAQQFTGRPGKYVPVKKTV 434          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_BACWK (ATP synthase subunit beta OS=Bacillus weihenstephanensis (strain KBAB4) GN=atpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 66/220 (30.00%), Postives = 114/220 (51.82%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+K+T +V    N P  AR+    TG+T+AE+FRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER             GS+T + AV  P  D++DP  + T + +     L+++L Q   +P+V+ L S S+  +      E    +   +  + ++ LQR  +L +I+ ++G D L+E DK+ +  A+ + + +L+QN
Sbjct:  205 VIKKTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTN-------KGSITSIQAVYVPADDYTDPAPATTFAHLDATTNLERRLTQMGIYPAVDPLASTSRALSP-----EIVGEEHYEVARQVQQTLQRYKELQDIIAILGMDELSEEDKLVVHRARRI-QFFLSQN 411          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_BACHK (ATP synthase subunit beta OS=Bacillus thuringiensis subsp. konkukian GN=atpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 66/220 (30.00%), Postives = 114/220 (51.82%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQN 658
            V+K+T +V    N P  AR+    TG+T+AE+FRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER             GS+T + AV  P  D++DP  + T + +     L+++L Q   +P+V+ L S S+  +      E    +   +  + ++ LQR  +L +I+ ++G D L+E DK+ +  A+ + + +L+QN
Sbjct:  205 VIKKTAMVFGQMNEPPGARQRVALTGLTMAEHFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTN-------KGSITSIQAVYVPADDYTDPAPATTFAHLDATTNLERRLTQMGIYPAVDPLASTSRALSP-----EIVGEEHYEVARQVQQTLQRYKELQDIIAILGMDELSEEDKLVVHRARRI-QFFLSQN 411          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_GEOTH4.952e-2230.45ATP synthase subunit beta OS=Geobacillus thermoleo... [more]
ATPB_GEOKA4.952e-2230.45ATP synthase subunit beta OS=Geobacillus kaustophi... [more]
ATPB_STRA56.468e-2231.36ATP synthase subunit beta OS=Streptococcus agalact... [more]
ATPB_STRA36.468e-2231.36ATP synthase subunit beta OS=Streptococcus agalact... [more]
ATPB_STRA16.468e-2231.36ATP synthase subunit beta OS=Streptococcus agalact... [more]
ATPB_CLOBB6.468e-2230.60ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_CLOBA6.468e-2230.60ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_CHLAD6.468e-2228.69ATP synthase subunit beta OS=Chloroflexus aggregan... [more]
ATPB_BACWK6.468e-2230.00ATP synthase subunit beta OS=Bacillus weihenstepha... [more]
ATPB_BACHK6.468e-2230.00ATP synthase subunit beta OS=Bacillus thuringiensi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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