BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_ARTS2 (ATP synthase subunit beta OS=Arthrobacter sp. (strain FB24) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 66/223 (29.60%), Postives = 115/223 (51.57%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFT 667
            V+K T LV    + P   R     + +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K         S+T + A+  P  D++DP  + T + +     L +++A R  +P+V+ L S S+    L+  Y     D  N   + +++LQ+  +L +I+ ++G D L+E DKI +  A+ +++ +L+QN +T
Sbjct:  217 VLKDTALVFGQMDEPPGTRLRVALSALTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGLLQERITSTK-------GHSITSMQAIYVPADDYTDPAPATTFAHLDATTELSREIASRGLYPAVDPLTSTSRI---LDPQY--IGKDHYNTAVRVKQILQKNKELQDIIAILGVDELSEEDKIVVSRARRIQQ-FLSQNTYT 426          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_ARTCA (ATP synthase subunit beta OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=atpD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 66/223 (29.60%), Postives = 115/223 (51.57%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFT 667
            V+K T LV    + P   R     + +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K         S+T + A+  P  D++DP  + T + +     L +++A R  +P+V+ L S S+    L+  Y     D  N   + +++LQ+  +L +I+ ++G D L+E DKI +  A+ +++ +L+QN +T
Sbjct:  217 VLKDTALVFGQMDEPPGTRLRVALSALTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGLLQERITSTK-------GHSITSMQAIYVPADDYTDPAPATTFAHLDATTELSREIASRGLYPAVDPLTSTSRI---LDPQY--IGKDHYNTAVRVKQILQKNKELQDIIAILGVDELSEEDKIVVSRARRIQQ-FLSQNTYT 426          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_ARTAT (ATP synthase subunit beta OS=Arthrobacter aurescens (strain TC1) GN=atpD PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 66/223 (29.60%), Postives = 115/223 (51.57%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFT 667
            V+K T LV    + P   R     + +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K         S+T + A+  P  D++DP  + T + +     L +++A R  +P+V+ L S S+    L+  Y     D  N   + +++LQ+  +L +I+ ++G D L+E DKI +  A+ +++ +L+QN +T
Sbjct:  216 VLKDTALVFGQMDEPPGTRLRVALSALTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGLLQERITSTK-------GHSITSMQAIYVPADDYTDPAPATTFAHLDATTELSREIASRGLYPAVDPLTSTSRI---LDPQY--IGKDHYNTAVRVKQILQKNKELQDIIAILGVDELSEEDKIVVSRARRIQQ-FLSQNTYT 425          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: FLII_AGRT5 (Flagellum-specific ATP synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=fliI PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 66/229 (28.82%), Postives = 117/229 (51.09%), Query Frame = 2
Query:    5 MKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVG---------KDALAEGDKITLETAKLLREDYLAQNAF 664
            M ++  V  TS+     R+ +  + +TIAE+FRD G NV ++ DS +R+A A+RE++    E P   GYPA +   L    ERAG      G E TG++T + ++   G + +DP+  +T  I+     LD+ LA+   +P +N L S S+ +       + + PD   + ++ + ++ R ++  ++ +L+G          D   +   I  ET K L ++  AQ+A+
Sbjct:  233 MSKSVAVVATSDESPMLRKMAPLSAVTIAEHFRDQGDNVLLIIDSVTRFAHAIREVAVASGEPPVARGYPASVFTELPRLLERAGP-----GAEGTGTITAIVSILVDGDNHNDPIADSTRGILDGHIVLDRSLAEEGRYPPINPLASISRLAK------KAWTPDQEKLVSRLKALVHRFEETRDL-RLIGGYRPGTDPDLDMAVKQVPIIYETLKQLPDEPAAQDAY 449          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SHEWM (ATP synthase subunit beta OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 70/221 (31.67%), Postives = 106/221 (47.96%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +  +V    N P   R     TG+T+AE FRD G +V    D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L + +A    +P+V+ L S S+    L    E +D     +    + VLQR  +L +I+ ++G D L++ DK T+  A+ + E YL+Q  F
Sbjct:  197 VLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRNIASMGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VANGVQTVLQRYKELKDIIAILGMDELSDEDKTTVSRARKI-EKYLSQPFF 404          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SHEHH (ATP synthase subunit beta OS=Shewanella halifaxensis (strain HAW-EB4) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 70/221 (31.67%), Postives = 107/221 (48.42%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +  +V    N P   R     TG+T+AE FRD G +V    D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L + +A    +P+V+ L S S+    L    E +D     + +  + VLQR  +L +I+ ++G D L++ DK T+  A+ + E YL+Q  F
Sbjct:  197 VLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRNIASMGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VASGVQTVLQRYKELKDIIAILGMDELSDEDKTTVARARKI-EKYLSQPFF 404          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_RHILW (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 65/218 (29.82%), Postives = 107/218 (49.08%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  +    ER            TGS+T V A+  P  D +DP  + + + +     L + +A++  +P+V+ L S S+    +    E ++     +  K +  LQR   L +I+ ++G D L+E DKI +  A+ + E +L+Q  F
Sbjct:  217 KAALVYGQMNEPPGARARVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITTT-------TTGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYE-----VARKVQSTLQRYKALQDIIAILGMDELSEEDKIAVARARKI-ERFLSQPFF 421          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_KLULA (ATP synthase subunit beta, mitochondrial OS=Kluyveromyces lactis GN=ATP2 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 69/216 (31.94%), Postives = 109/216 (50.46%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            +  LV    N P  AR     TG+TIAEYFRD  G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GSVT V AV  P  D +DP  + T + +     L + +++   +P+V+ L S S+   A     E +D     + T+ ++ LQ    L +I+ ++G D L+E DK+T+E A+ ++  +L+Q
Sbjct:  241 KVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTK-------KGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYD-----VATQVQQTLQAYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 443          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_FERNB (ATP synthase subunit beta OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 68/218 (31.19%), Postives = 107/218 (49.08%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN-----IRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLR 637
            V+  T LV    N P  AR     T +T+AEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T V A+  P  D +DP  + T + +     L ++LA    +P+V+ L S SK            DP+ +      +    +EVLQR  DL +I+ ++G + L+E DK+ ++ A+ ++
Sbjct:  204 VLNNTVLVFGQMNEPPGARFRVALTALTVAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATDMGELQERITSTK-------RGSITSVQAIYVPADDITDPAPATTFTHLDATIVLSRQLAALGLYPAVDPLDSTSKI----------LDPNIVGKEHYEVARGVQEVLQRYKDLQDIIAILGMEELSEEDKLIVQRARKIQ 404          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CORJK (ATP synthase subunit beta OS=Corynebacterium jeikeium (strain K411) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 70/225 (31.11%), Postives = 112/225 (49.78%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY---STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V++ T LV    + P   R     +G+T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K         S+T + AV  P  D++DP  + T + +     LD+ +A +  +P+VN L S S+        E  YE        +  +   +LQ+  +L +I+ ++G D L+E DKIT++ A+ L E +L QN F
Sbjct:  216 VLQDTALVFGQMDEPPGVRMRVALSGLTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQERITSTK-------GRSITSLQAVYVPADDYTDPAPATTFAHLDATTELDRSIASKGIYPAVNPLTSTSRILEPGIVGERHYE--------VAQRVIHILQKNKELQDIIAILGMDELSEEDKITVQRARRL-ERFLGQNFF 424          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_ARTS24.635e-2029.60ATP synthase subunit beta OS=Arthrobacter sp. (str... [more]
ATPB_ARTCA4.635e-2029.60ATP synthase subunit beta OS=Arthrobacter chloroph... [more]
ATPB_ARTAT4.635e-2029.60ATP synthase subunit beta OS=Arthrobacter aurescen... [more]
FLII_AGRT56.053e-2028.82Flagellum-specific ATP synthase OS=Agrobacterium t... [more]
ATPB_SHEWM6.053e-2031.67ATP synthase subunit beta OS=Shewanella woodyi (st... [more]
ATPB_SHEHH6.053e-2031.67ATP synthase subunit beta OS=Shewanella halifaxens... [more]
ATPB_RHILW6.053e-2029.82ATP synthase subunit beta OS=Rhizobium leguminosar... [more]
ATPB_KLULA6.053e-2031.94ATP synthase subunit beta, mitochondrial OS=Kluyve... [more]
ATPB_FERNB6.053e-2031.19ATP synthase subunit beta OS=Fervidobacterium nodo... [more]
ATPB_CORJK6.053e-2031.11ATP synthase subunit beta OS=Corynebacterium jeike... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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