BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_YERPB (ATP synthase subunit beta OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 68/221 (30.77%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQSILQRYQELKDIIAILGMDELSEDDKLVVSRARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_YERPA (ATP synthase subunit beta OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 68/221 (30.77%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQSILQRYQELKDIIAILGMDELSEDDKLVVSRARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_YERP3 (ATP synthase subunit beta OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 68/221 (30.77%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQSILQRYQELKDIIAILGMDELSEDDKLVVSRARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_YERE8 (ATP synthase subunit beta OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 68/221 (30.77%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQSILQRYQELKDIIAILGMDELSEDDKLVVSRARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SULDN (ATP synthase subunit beta OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 68/227 (29.96%), Postives = 114/227 (50.22%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +  L     + P  AR     TG+T+AEYFRD  G +V M  D+  R+A++  E+S  L  +P+  GY   LA  + +  +R    K        GS+T V AV  P  D +DP  ++  + +     L++K+A++  +P+V+ L S S+            DP  +     N+    ++ LQ+  DL +I+ ++G D L+E DK  +E A+ + E +L+Q  F
Sbjct:  205 VLDKVALCYGQMSEPPGARNRIALTGLTMAEYFRDEKGLDVLMFVDNIFRFAQSGSEMSALLGRIPSAVGYQPTLAREMGALQDRITSTK-------NGSITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSSSRL----------LDPQILGEEHYNVARGVQQTLQKYKDLQDIIAILGMDELSEDDKNIVERARKI-EKFLSQPFF 413          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SHEAM (ATP synthase subunit beta OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 68/218 (31.19%), Postives = 108/218 (49.54%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ +  +V    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + VLQR  +L +I+ ++G D L++ DK+T+  A+ + E +L+Q
Sbjct:  201 VLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VANGVQNVLQRYKELKDIIAILGMDELSDDDKMTVSRARKI-ERFLSQ 405          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_ROSCS (ATP synthase subunit beta OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 68/232 (29.31%), Postives = 113/232 (48.71%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            V  +T +V    N P  AR     T +T+AEYFRD G +V +  D+  R+ +A  E+S  L  MP+  GY   L   +    ER    K        GS+T + AV  P  D++DP  +   S +     L++ +A +  +P+V+ L S S+            DP+ +      +  + + VLQR  DL +I+ ++G + L++ DK+T+  A+ + E + +Q  FT   +F
Sbjct:  208 VFDKTVMVFGQMNEPPGARLRVGLTAMTMAEYFRDEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSQVGYQPTLGTEMGELQERITSTK-------KGSITSMQAVYVPADDYTDPAPATVFSHLDATITLERSIAAKGIYPAVDPLASTSRI----------LDPNIVGEEHYRVAREVQRVLQRYKDLQDIIAILGVEELSDEDKLTVARARKI-ERFFSQ-PFTVAQQF 420          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_RENSM (ATP synthase subunit beta OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=atpD PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 66/223 (29.60%), Postives = 116/223 (52.02%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFT 667
            V+K T LV    + P   R     + +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K         S+T + AV  P  D++DP  +AT + +     L +++A R  +P+++ L S S+    L+  Y     D  +   + +++LQ+  +L +I+ ++G D L+E DKI +  A+ +++ +L+QN +T
Sbjct:  217 VLKDTALVFGQMDEPPGTRLRVALSALTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGLLQERITSTK-------GRSITSMQAVYVPADDYTDPAPAATFAHLDATTELSREIASRGLYPAIDPLTSTSR---ILDPQY--IGKDHYDTAVRVKQILQKNKELQDIIAVLGVDELSEEDKIVVSRARRIQQ-FLSQNTYT 426          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_PHOLL (ATP synthase subunit beta OS=Photorhabdus luminescens subsp. laumondii GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 68/221 (30.77%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +     N+    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHY-----NVARGVQSILQRYQELKDIIAILGMDELSEDDKLVVARARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_LEUMM (ATP synthase subunit beta OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 65/213 (30.52%), Postives = 110/213 (51.64%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLR 637
            V+K+T +V    N P  AR     TG+T+AE FRD  G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  +    ER    K        GSVT + AV  P  D++DP  + T + +     L++ L Q+  +P+V+ L S    S+AL+   +    +   + T+ +  LQR  +L +I+ ++G D L++ +K T+  A+ ++
Sbjct:  202 VLKQTAMVYGQMNEPPGARMRVALTGLTMAENFRDNEGKDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTK-------KGSVTSIQAVYVPADDYTDPAPATTFAHLDATTNLERALTQQGIYPAVDPLAS---TSSALDP--QIVGQEHYEVATEVQRTLQRYRELQDIISILGMDELSDEEKTTVNRARRIQ 402          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_YERPB7.906e-2030.77ATP synthase subunit beta OS=Yersinia pseudotuberc... [more]
ATPB_YERPA7.906e-2030.77ATP synthase subunit beta OS=Yersinia pestis bv. A... [more]
ATPB_YERP37.906e-2030.77ATP synthase subunit beta OS=Yersinia pseudotuberc... [more]
ATPB_YERE87.906e-2030.77ATP synthase subunit beta OS=Yersinia enterocoliti... [more]
ATPB_SULDN7.906e-2029.96ATP synthase subunit beta OS=Sulfurimonas denitrif... [more]
ATPB_SHEAM7.906e-2031.19ATP synthase subunit beta OS=Shewanella amazonensi... [more]
ATPB_ROSCS7.906e-2029.31ATP synthase subunit beta OS=Roseiflexus castenhol... [more]
ATPB_RENSM7.906e-2029.60ATP synthase subunit beta OS=Renibacterium salmoni... [more]
ATPB_PHOLL7.906e-2030.77ATP synthase subunit beta OS=Photorhabdus luminesc... [more]
ATPB_LEUMM7.906e-2030.52ATP synthase subunit beta OS=Leuconostoc mesentero... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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