BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_COREF (ATP synthase subunit beta OS=Corynebacterium efficiens GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 71/225 (31.56%), Postives = 112/225 (49.78%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY---STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V++ T LV    + P   R     +G+T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K         S+T + AV  P  D++DP  + T + +     LD+ +A +  +P+VN L S S+    S   E  YE        +  +   +LQ+  +L +I+ ++G D L+E DKIT+  A+ L E +L QN F
Sbjct:  216 VLQDTALVFGQMDEPPGVRMRVALSGLTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQERITSTK-------GRSITSLQAVYVPADDYTDPAPATTFAHLDATTELDRSIASKGIYPAVNPLTSTSRILEPSIVGERHYE--------VSQRVIGILQKNKELQDIIAILGMDELSEEDKITVARARRL-ERFLGQNFF 424          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CAUSK (ATP synthase subunit beta OS=Caulobacter sp. (strain K31) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 66/207 (31.88%), Postives = 103/207 (49.76%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAK 628
            R  LV    N P  AR     TG++IAEYFRD  G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  +A+ + +     L + +A +  FP+V+ L S S+    L    E +D     +    +EVLQ+   L +I+ ++G D L+E DK+T+  A+
Sbjct:  279 RCALVYGQMNEPPGARARVALTGLSIAEYFRDEEGKDVLLFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMGNLQERITSTN-------KGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRDIAAQAIFPAVDPLDSTSRIMDPLIIGQEHYD-----VARSVQEVLQQYKSLKDIIAILGMDELSEEDKLTVARAR 473          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_VESOH (ATP synthase subunit beta OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/226 (30.09%), Postives = 112/226 (49.56%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-----DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AEYFRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA+ + +  ER    K        GS+T + AV  P  D +DP  + T + +     L +++A+   +P+V+           L+S   Q DP     +  N+    + VLQR  +L +I+ ++G D L+E DK ++  A+ ++  +L+Q  F
Sbjct:  197 VLNKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGALQERITSTK-------KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQVAELGIYPAVD----------PLDSTSRQLDPLIVGEEHYNVARGVQGVLQRYKELKDIIAILGMDELSEEDKRSVSRARKVQR-FLSQPFF 404          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SODGM (ATP synthase subunit beta OS=Sodalis glossinidius (strain morsitans) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/221 (30.77%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQSILQRYQELKDIIAILGMDELSEDDKLVVSRARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SHESR (ATP synthase subunit beta OS=Shewanella sp. (strain MR-7) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/218 (31.19%), Postives = 108/218 (49.54%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ +  +V    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + VLQR  +L +I+ ++G D L++ DK+T+  A+ + E +L+Q
Sbjct:  201 VLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VANGVQTVLQRYKELKDIIAILGMDELSDDDKMTVSRARKI-ERFLSQ 405          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SHESM (ATP synthase subunit beta OS=Shewanella sp. (strain MR-4) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/218 (31.19%), Postives = 108/218 (49.54%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ +  +V    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + VLQR  +L +I+ ++G D L++ DK+T+  A+ + E +L+Q
Sbjct:  201 VLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VANGVQTVLQRYKELKDIIAILGMDELSDDDKMTVSRARKI-ERFLSQ 405          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SHEON (ATP synthase subunit beta OS=Shewanella oneidensis GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/218 (31.19%), Postives = 108/218 (49.54%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ +  +V    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + VLQR  +L +I+ ++G D L++ DK+T+  A+ + E +L+Q
Sbjct:  201 VLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VANGVQTVLQRYKELKDIIAILGMDELSDDDKMTVSRARKI-ERFLSQ 405          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SERP5 (ATP synthase subunit beta OS=Serratia proteamaculans (strain 568) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L + +A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRNIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQSILQRYQELKDIIAILGMDELSEEDKLVVSRARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_RUBXD (ATP synthase subunit beta OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=atpD PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 70/227 (30.84%), Postives = 110/227 (48.46%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+K T L+    N P  AR     TG+TIAEYFRD +G +V    D+  R+A+A  E+S  +  MP++ GY   L   + +  ER    K        GS+T   AV  P  D +DP      + +     L + L ++  FP+V+ L S S             DPD +      +  + + +LQR  +L +I+ ++G D L+E DK+ +  A+ L+  +L+Q  F
Sbjct:  217 VLKNTALIFGQMNEPPGARFRVGLTGVTIAEYFRDVLGQDVLFFLDNIFRFAQAGNEVSALMGRMPSEVGYQPTLGTEMGALQERITSTK-------KGSITSFQAVYVPADDPTDPAPFTVFAHLDSTVELSRSLFEQAIFPAVDPLASSSTI----------LDPDVVGQEHYEVAQEVKGILQRYKELQDIIAILGIDELSEEDKVIVARARRLQR-FLSQPFF 425          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_RHIEC (ATP synthase subunit beta OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 64/218 (29.36%), Postives = 107/218 (49.08%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  +    ER            TGS+T V A+  P  D +DP  + + + +     L + +A++  +P+V+ L S S+    +    E ++     +  K +  LQR   L +I+ ++G D L+E DK+ +  A+ + E +L+Q  F
Sbjct:  214 KAALVYGQMNEPPGARARVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITTT-------TTGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYE-----VARKVQSTLQRYKALQDIIAILGMDELSEEDKLAVARARKI-ERFLSQPFF 418          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_COREF7.906e-2031.56ATP synthase subunit beta OS=Corynebacterium effic... [more]
ATPB_CAUSK7.906e-2031.88ATP synthase subunit beta OS=Caulobacter sp. (stra... [more]
ATPB_VESOH1.033e-1930.09ATP synthase subunit beta OS=Vesicomyosocius okuta... [more]
ATPB_SODGM1.033e-1930.77ATP synthase subunit beta OS=Sodalis glossinidius ... [more]
ATPB_SHESR1.033e-1931.19ATP synthase subunit beta OS=Shewanella sp. (strai... [more]
ATPB_SHESM1.033e-1931.19ATP synthase subunit beta OS=Shewanella sp. (strai... [more]
ATPB_SHEON1.033e-1931.19ATP synthase subunit beta OS=Shewanella oneidensis... [more]
ATPB_SERP51.033e-1930.77ATP synthase subunit beta OS=Serratia proteamacula... [more]
ATPB_RUBXD1.033e-1930.84ATP synthase subunit beta OS=Rubrobacter xylanophi... [more]
ATPB_RHIEC1.033e-1929.36ATP synthase subunit beta OS=Rhizobium etli (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
back to top