BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8171 contig Csv1_Contig8171:173..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_RHIE6 (ATP synthase subunit beta OS=Rhizobium etli (strain CIAT 652) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 64/218 (29.36%), Postives = 107/218 (49.08%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  +    ER            TGS+T V A+  P  D +DP  + + + +     L + +A++  +P+V+ L S S+    +    E ++     +  K +  LQR   L +I+ ++G D L+E DK+ +  A+ + E +L+Q  F
Sbjct:  214 KAALVYGQMNEPPGARARVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGQMQERITTT-------TTGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYE-----VARKVQSTLQRYKALQDIIAILGMDELSEEDKLAVARARKI-ERFLSQPFF 418          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_PROMH (ATP synthase subunit beta OS=Proteus mirabilis (strain HI4320) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/221 (30.77%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_PECCP (ATP synthase subunit beta OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/221 (30.77%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQSILQRYQELKDIIAILGMDELSEEDKLVVSRARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_MOOTA (ATP synthase subunit beta OS=Moorella thermoacetica (strain ATCC 39073) GN=atpD PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 69/227 (30.40%), Postives = 112/227 (49.34%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETA----KLLREDYLAQNAFT 667
            V+++T LV    N P  AR     TG+T+AEYFRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T V A+  P  D +DP  + T + +     L +++A+   +P+V+ L S S+         E +      +    ++VLQR  +L +I+ ++G D L+E DK+ +  A    + L + +    AFT
Sbjct:  199 VLEKTALVFGQMNEPPGARLRVGLTGLTMAEYFRDAEGQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTK-------KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPRVLGEEHY-----QVARGVQQVLQRYKELQDIIAILGMDELSEEDKLIVARARKIQRFLSQPFHVAEAFT 413          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_METCA (ATP synthase subunit beta OS=Methylococcus capsulatus GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 67/221 (30.32%), Postives = 110/221 (49.77%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+TIAE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T + AV  P  D +DP  + T + +     L +++A+   +P+V+ L S S+    L   +E ++        + +  LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  197 VLDKVSLVYGQMNEPPGNRLRVALTGLTIAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPNLAEEMGILQERITSTK-------TGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRQLDPLVIGHEHYE-----TTRRVQSTLQRYKELRDIIAILGMDELSENDKLIVSRARKIQR-FLSQPFF 404          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_MESFL (ATP synthase subunit beta OS=Mesoplasma florum GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 69/227 (30.40%), Postives = 112/227 (49.34%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +T+LV    N P  AR     TG+TIAE+FRD    +V +  D+  R+ +A  E+S  L  MP+  GY   L+  + S  ER             GS+T V AV  P  D +DP  + T + +     LD+ +A    +P+V+ L S S+            DP+ I     N+    +  LQ+  DL  I+ ++G D L+  DK+ ++ A+ +R ++L+Q+ +
Sbjct:  211 VLDKTSLVFGQMNEPPGARMRVALTGLTIAEHFRDEKNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST-------NKGSITSVQAVYVPADDLTDPAPATTFTHLDAKIVLDRSIASLGIYPAVDPLSSSSR----------MLDPEIIGEEHYNVALGVQGTLQKYQDLQSIIAILGMDELSAEDKLIVQRARKIR-NFLSQSFY 419          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_MARAV (ATP synthase subunit beta OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/223 (30.49%), Postives = 107/223 (47.98%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ +  +V    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T + AV  P  D +DP  + T S +     L + +A +  +P+++           L+S   Q DP  I     N+    + VLQR  +L +I+ ++G D L+E DK+ +  A+ + E +L+Q
Sbjct:  197 VLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGQLQERITSTK-------TGSITSIQAVYVPADDLTDPSPATTFSHLDATVVLSRDIASKGIYPAID----------PLDSTSRQLDPLVIGEQHYNVARGVQNVLQRYKELKDIIAILGMDELSEDDKLIVSRARKI-ERFLSQ 401          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_FERIS (ATP synthase subunit beta OS=Fervidobacterium islandicum GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/218 (31.19%), Postives = 107/218 (49.08%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN-----IRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLR 637
            V+  T LV    N P  AR     T +TIAEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   L+  +    ER    K        GS+T V A+  P  D +DP  + T + +     L ++LA    +P+V+ L S SK            DP+ +      +    +EVLQR  DL +I+ ++G + L+E DK+ ++ A+ ++
Sbjct:  204 VLNNTVLVFGQMNEPPGARFRVALTALTIAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTDMGELQERITSTK-------KGSITSVQAIYVPADDITDPAPATTFTHLDATIVLSRQLAALGLYPAVDPLDSTSKI----------LDPNIVGKEHYEVARGVQEVLQRYKDLQDIIAILGMEELSEEDKLIVQRARKIQ 404          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_ERWCT (ATP synthase subunit beta OS=Erwinia carotovora subsp. atroseptica GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 68/221 (30.77%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VARGVQSILQRYQELKDIIAILGMDELSEEDKLVVSRARKIQR-FLSQPFF 406          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSC (ATP synthase subunit beta OS=Dehalococcoides sp. (strain CBDB1) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 69/227 (30.40%), Postives = 111/227 (48.90%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +TT+V    N   A R     TG+T+AEYFRD    +V +  D+  R+  A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T   AV  P  D++DP   AT   +     L++ LA++  +P+V+ L S S+            DP  +      +    ++VLQR  DL +++ ++G + L+E DK+T+  A+ ++  +L Q  F
Sbjct:  199 VLPKTTMVFGQMNELPAVRLRIALTGLTMAEYFRDEERQDVLLFIDNIYRYTLAGMEVSALLGRMPSAVGYQPTLATEMGALQERIASTK-------QGSITSFQAVYVPADDYTDPGVVATFGHLDAMIALERSLAEQALYPAVDPLASNSRI----------LDPQVVGEEHYKVARDVQKVLQRYKDLQDVIAILGMEELSEEDKLTVARARRIQR-FLTQPMF 407          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHIE61.033e-1929.36ATP synthase subunit beta OS=Rhizobium etli (strai... [more]
ATPB_PROMH1.033e-1930.77ATP synthase subunit beta OS=Proteus mirabilis (st... [more]
ATPB_PECCP1.033e-1930.77ATP synthase subunit beta OS=Pectobacterium caroto... [more]
ATPB_MOOTA1.033e-1930.40ATP synthase subunit beta OS=Moorella thermoacetic... [more]
ATPB_METCA1.033e-1930.32ATP synthase subunit beta OS=Methylococcus capsula... [more]
ATPB_MESFL1.033e-1930.40ATP synthase subunit beta OS=Mesoplasma florum GN=... [more]
ATPB_MARAV1.033e-1930.49ATP synthase subunit beta OS=Marinobacter aquaeole... [more]
ATPB_FERIS1.033e-1931.19ATP synthase subunit beta OS=Fervidobacterium isla... [more]
ATPB_ERWCT1.033e-1930.77ATP synthase subunit beta OS=Erwinia carotovora su... [more]
ATPB_DEHSC1.033e-1930.40ATP synthase subunit beta OS=Dehalococcoides sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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