BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8171 contig Csv1_Contig8171:173..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_DEHSB (ATP synthase subunit beta OS=Dehalococcoides sp. (strain BAV1) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 69/227 (30.40%), Postives = 111/227 (48.90%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +TT+V    N   A R     TG+T+AEYFRD    +V +  D+  R+  A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T   AV  P  D++DP   AT   +     L++ LA++  +P+V+ L S S+            DP  +      +    ++VLQR  DL +++ ++G + L+E DK+T+  A+ ++  +L Q  F
Sbjct:  199 VLPKTTMVFGQMNELPAVRLRIALTGLTMAEYFRDEERQDVLLFIDNIYRYTLAGMEVSALLGRMPSAVGYQPTLATEMGALQERIASTK-------QGSITSFQAVYVPADDYTDPGVVATFGHLDAMIALERSLAEQALYPAVDPLASNSRI----------LDPQVVGEEHYKVARDVQKVLQRYKDLQDVIAILGMEELSEEDKLTVARARRIQR-FLTQPMF 407          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_DEHE1 (ATP synthase subunit beta OS=Dehalococcoides ethenogenes (strain 195) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 69/227 (30.40%), Postives = 111/227 (48.90%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +TT+V    N   A R     TG+T+AEYFRD    +V +  D+  R+  A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T   AV  P  D++DP   AT   +     L++ LA++  +P+V+ L S S+            DP  +      +    ++VLQR  DL +++ ++G + L+E DK+T+  A+ ++  +L Q  F
Sbjct:  199 VLPKTTMVFGQMNELPAVRLRIALTGLTMAEYFRDEERQDVLLFIDNIYRYTLAGMEVSALLGRMPSAVGYQPTLATEMGALQERIASTK-------QGSITSFQAVYVPADDYTDPGVVATFGHLDAMIALERSLAEQALYPAVDPLASNSRI----------LDPQVVGEEHYQVARDVQKVLQRYKDLQDVIAILGMEELSEEDKLTVARARRIQR-FLTQPMF 407          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CORA7 (ATP synthase subunit beta OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 70/225 (31.11%), Postives = 113/225 (50.22%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY---STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V++ T LV    + P   R     +G+T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K         S+T + AV  P  D++DP  + T + +     LD+ +A +  +P+VN L S S+    S   E  YE        +  +   +LQ+  +L +I+ ++G D L+E DKIT++ A+ + E +L QN F
Sbjct:  216 VLQDTALVFGQMDEPPGVRMRVALSGLTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQERITSTK-------GKSITSLQAVYVPADDYTDPAPATTFAHLDATTELDRGIASKGIYPAVNPLTSTSRILEPSIVGERHYE--------VAQRVIGILQKNKELQDIIAILGMDELSEEDKITVQRARRI-ERFLGQNFF 424          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CHRSD (ATP synthase subunit beta OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 70/221 (31.67%), Postives = 109/221 (49.32%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+TIAE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T S +     L + +A+   +P+++ L S S+    L    E +     N     + VLQR  +L +I+ ++G D L++ DK+T+  A+ ++  +L+Q  F
Sbjct:  196 VLDKVSLVYGQMNEPPGNRLRVALTGLTIAEKFRDDGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFSHLDATVVLARSIAELGIYPAIDPLDSTSRQLDPLTVGEEHY-----NTARGVQGVLQRYKELKDIIAILGMDELSDEDKLTVSRARKIQR-FLSQPFF 403          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_BACFR (ATP synthase subunit beta OS=Bacteroides fragilis GN=atpD PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 66/229 (28.82%), Postives = 116/229 (50.66%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY-----NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            + TLV    N P  AR +   +G+T+AE FRDMG      ++    D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER    K       TGS+T V AV  P  D +DP  + T + +     L +K+ +   +P+V+ L S S+         E +D     +  + +++LQR  +L +I+ ++G + L++ D++ +  A+ ++  +L+Q  FT  ++F
Sbjct:  236 QATLVFGQMNEPPGARASVALSGLTVAESFRDMGAKSGARDILFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQERITSTK-------TGSITSVQAVYVPADDLTDPAPATTFTHLDATTVLSRKITELGIYPAVDPLESTSRILDPHIVGQEHYD-----VAQRVKQILQRNKELQDIISILGMEELSDADRLVVNRARRVQR-FLSQ-PFTVAEQF 450          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_BACFN (ATP synthase subunit beta OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=atpD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 66/229 (28.82%), Postives = 116/229 (50.66%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY-----NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            + TLV    N P  AR +   +G+T+AE FRDMG      ++    D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER    K       TGS+T V AV  P  D +DP  + T + +     L +K+ +   +P+V+ L S S+         E +D     +  + +++LQR  +L +I+ ++G + L++ D++ +  A+ ++  +L+Q  FT  ++F
Sbjct:  236 QATLVFGQMNEPPGARASVALSGLTVAESFRDMGAKSGARDILFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGAMQERITSTK-------TGSITSVQAVYVPADDLTDPAPATTFTHLDATTVLSRKITELGIYPAVDPLESTSRILDPHIVGQEHYD-----VAQRVKQILQRNKELQDIISILGMEELSDADRLVVNRARRVQR-FLSQ-PFTVAEQF 450          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SHESA (ATP synthase subunit beta OS=Shewanella sp. (strain ANA-3) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 68/218 (31.19%), Postives = 108/218 (49.54%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ +  +V    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D     +    + VLQR  +L +I+ ++G D L++ DK+T+  A+ + E +L+Q
Sbjct:  201 VLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----VANGVQTVLQRYKELKDIIAILGMDELSDEDKMTVSRARKI-ERFLSQ 405          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SHELP (ATP synthase subunit beta OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 69/226 (30.53%), Postives = 108/226 (47.79%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ +  +V    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L + +A    +P+V+           L+S   Q DP  +     ++ +  + VLQR  +L +I+ ++G D L++ DK T+  A+ + E YL+Q  F
Sbjct:  197 VLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGKDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRNIASLGIYPAVD----------PLDSTSRQLDPQVVGQEHYDVASGVQNVLQRYKELKDIIAILGMDELSDEDKTTVARARKI-EKYLSQPFF 404          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_MYCS5 (ATP synthase subunit beta OS=Mycoplasma synoviae (strain 53) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 75/230 (32.61%), Postives = 115/230 (50.00%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFD--PDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            V+ +T LV    N P  AR     TG+T+AEYFRD    +V +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER           R+GS+T V AV  P  D +DP  + T S +     LD+ +A    +P+++ L S S+    L    E +    D INI       LQR  +L +I+ ++G   L+E DK  +  A+ +R ++L+Q  FT  +KF
Sbjct:  203 VLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDKQNQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITST-------RSGSITSVQAVYVPADDLTDPAPATTFSHLDAKTVLDRNVAALGIYPAIDPLESSSRLLDPLVVGQEHYKVAQDVINI-------LQRFKELQDIIAILGMGELSEEDKKIVARARKIR-NFLSQ-PFTVAEKF 416          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_IDILO (ATP synthase subunit beta OS=Idiomarina loihiensis GN=atpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 71/226 (31.42%), Postives = 109/226 (48.23%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+TIAE FRD G +V    D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L++ +A    +P+V+           L+S   Q DP  I     +     +EVLQR  +L +I+ ++G D L+E DK+++  A+ ++  +L+Q  F
Sbjct:  200 VLDKVSLVYGQMNEPPGNRLRVALTGLTIAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLNRDIASLGIYPAVD----------PLDSTSRQLDPQVIGDEHYDTAMGVQEVLQRYKELKDIIAILGMDELSEEDKLSVSRARKIQR-FLSQPFF 407          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_DEHSB1.033e-1930.40ATP synthase subunit beta OS=Dehalococcoides sp. (... [more]
ATPB_DEHE11.033e-1930.40ATP synthase subunit beta OS=Dehalococcoides ethen... [more]
ATPB_CORA71.033e-1931.11ATP synthase subunit beta OS=Corynebacterium aurim... [more]
ATPB_CHRSD1.033e-1931.67ATP synthase subunit beta OS=Chromohalobacter sale... [more]
ATPB_BACFR1.033e-1928.82ATP synthase subunit beta OS=Bacteroides fragilis ... [more]
ATPB_BACFN1.033e-1928.82ATP synthase subunit beta OS=Bacteroides fragilis ... [more]
ATPB_SHESA1.349e-1931.19ATP synthase subunit beta OS=Shewanella sp. (strai... [more]
ATPB_SHELP1.349e-1930.53ATP synthase subunit beta OS=Shewanella loihica (s... [more]
ATPB_MYCS51.349e-1932.61ATP synthase subunit beta OS=Mycoplasma synoviae (... [more]
ATPB_IDILO1.349e-1931.42ATP synthase subunit beta OS=Idiomarina loihiensis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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