BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8171 contig Csv1_Contig8171:173..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CLOPH (ATP synthase subunit beta OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 67/224 (29.91%), Postives = 109/224 (48.66%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-----DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+ +TT+V    N P  AR     TG+T+AEYFRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   L   + +  ER    K        GS+T V AV  P  D +DP  + T + +     L + + +   +P+V+           LES     DP     +   +    +E+LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q
Sbjct:  209 VINKTTMVFGQMNEPPGARMRVGLTGLTMAEYFRDKSGKDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTK-------NGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIVELGIYPAVD----------PLESTSRMLDPRVVGEEHYKVARDVQEILQRYKELQDIIAILGMDELSEDDKLLVARARKIQR-FLSQ 414          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CALS8 (ATP synthase subunit beta OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 68/232 (29.31%), Postives = 114/232 (49.14%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN-----IRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETA----KLLREDYLAQNAFT 667
            V+++T LV    N P  AR     TG+T+AEYFRD+ G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K        GS+T V A+  P  D +DP  + T + +     L +++A+   +P+V+ L S S+            DP  +      +    +++LQR  +L +I+ ++G D L+E DK+ +  A    + L + +    AFT
Sbjct:  201 VIEKTVLVFGQMNEPPGARMRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFIQAGSEVSALLGRIPSAVGYQPTLANEVGALQERITSTK-------RGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRI----------LDPRIVGEEHYYVARTVQQILQRYKELQDIIAILGMDELSEEDKLIVYRARKIQRFLSQPFFVAEAFT 415          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_ANATD (ATP synthase subunit beta OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 68/232 (29.31%), Postives = 114/232 (49.14%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN-----IRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETA----KLLREDYLAQNAFT 667
            V+++T LV    N P  AR     TG+T+AEYFRD+ G +V +  D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K        GS+T V A+  P  D +DP  + T + +     L +++A+   +P+V+ L S S+            DP  +      +    +++LQR  +L +I+ ++G D L+E DK+ +  A    + L + +    AFT
Sbjct:  201 VIEKTVLVFGQMNEPPGARMRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFIQAGSEVSALLGRIPSAVGYQPTLANEVGALQERITSTK-------KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRI----------LDPRIVGEEHYYVARTVQQILQRYKELQDIIAILGMDELSEEDKLIVYRARKIQRFLSQPFFVAEAFT 415          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: VATB1_HORVU (V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 66/222 (29.73%), Postives = 114/222 (51.35%), Query Frame = 2
Query:    5 MKRTTLVANTSNMPVAAREASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK-YSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            M+R TL  N +N P   R  +    +T AEY   + G +V ++    S +A+ALRE+S    E+P   GYP Y+   LA+ YERAG+++      RTGS+T +  ++ P  D + P    T  I +    +D++L  R+ +P +N L S S+   +A+     + D   ++ +  A   + +  D+  +  +VG++AL+  D + LE        ++AQ A+
Sbjct:  232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIE-----GRTGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGK--DVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAY 446          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_XANP2 (ATP synthase subunit beta OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 66/216 (30.56%), Postives = 109/216 (50.46%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSK-YSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            +  LV    N P  AR     TG+T+AE+FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER             GS+T V A+  P  D +DP  +A+ + +     L + +A++  +P+V+ L S S+  S A+         +  N   + ++ LQR   L +I+ ++G D L+E DKIT+  A+ + E +L+Q
Sbjct:  215 KCALVYGQMNEPPGARARVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTT-------TKGSITSVQAIYVPADDLTDPAPAASFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLSPAI------LGDEHYNTARQVQQTLQRYKALQDIIAILGMDELSEEDKITVARARKI-ERFLSQ 416          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_THEAB (ATP synthase subunit beta OS=Thermosipho africanus (strain TCF52B) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 70/224 (31.25%), Postives = 110/224 (49.11%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN-----IRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            V+  T LV    N P  AR     T +T+AEYFRD+ G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER    K        GS+T V A+  P  D +DP  + T + +     L ++ A    +P+V+ L S SK            DP+ I      +    +E+LQR  DL +I+ ++G + L+E DK+ ++ A+ + E +L+Q
Sbjct:  205 VLDNTVLVFGQMNEPPGARFRVALTALTMAEYFRDVEGRDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATDMGELQERITSTK-------KGSITSVQAIYVPADDITDPAPATTFTHLDATVVLSRRRAALGLYPAVDPLDSTSK----------MLDPNIIGQEHYEVARGVQEILQRYKDLQDIIAILGMEELSEEDKLIVQRARKI-ERFLSQ 410          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_KINRD (ATP synthase subunit beta OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 63/222 (28.38%), Postives = 113/222 (50.90%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V  +T LV    + P   R     + +T+AEYFRD+   +V +  D+  R+ +A  E+S  L  MP+  GY   LA  +    ER           R  S+T + A+  P  D++DP  + T + +     L +++A R  +P+V+ L S S+    L    + +D        + +++LQR  +L +I+ ++G D L+E DK+T+  A+ +++ +L+QN +
Sbjct:  219 VFDKTALVFGQMDEPPGTRLRVALSALTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPTLADEMGVLQERITST-------RGHSITSLQAIYVPADDYTDPAPATTFAHLDATTELSREIASRGLYPAVDPLTSTSRILDPLYIAQDHYDT-----AVRVKQILQRNKELQDIIAILGVDELSEEDKLTVSRARRIQQ-FLSQNTY 427          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_CLOD6 (ATP synthase subunit beta OS=Clostridium difficile (strain 630) GN=atpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 69/233 (29.61%), Postives = 115/233 (49.36%), Query Frame = 2
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKF 682
            V+ +T LV    N P  AR     TG+T+AE+FRD  G +V +  D+  R+ +A  E+S  L  MP+  GY   LA  + +  ER    K        GS+T V AV  P  D +DP  + T S +     L ++++    +P+V+           LES     DP  +      +    + +LQR  +L +I+ ++G D L++ DK+ +  A+ ++  +L+Q +FT  ++F
Sbjct:  201 VINKTALVFGQMNEPPGARMRVALTGLTMAEHFRDEQGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFSHLDAKTVLSRQISSLGIYPAVD----------PLESTSRILDPSIVGKEHYEVARGVQSILQRYKELQDIIAILGMDELSDEDKLIVARARKIQR-FLSQ-SFTVAEQF 414          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_BARQU (ATP synthase subunit beta OS=Bartonella quintana GN=atpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 64/215 (29.77%), Postives = 108/215 (50.23%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            +  LV    N P  AR     +G+TIAE FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER    K       TGS+T V A+  P  D +DP  + + + +     L + +A++  +P+V+ L S+S+    L    E +      +  + + +LQR   L +I+ ++G D L+E DK+ +  A+ + E +L+Q
Sbjct:  272 KCALVYGQMNEPPGARARVALSGLTIAESFRDEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGALQERITSTK-------TGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSFSRMLDPLVVGEEHY-----TVACQVQTILQRYRSLQDIIAILGMDELSEEDKLLVGRARKI-ERFLSQ 473          
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_BARHE (ATP synthase subunit beta OS=Bartonella henselae GN=atpD PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 64/215 (29.77%), Postives = 108/215 (50.23%), Query Frame = 2
Query:   11 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 655
            +  LV    N P  AR     +G+TIAE FRD G +V    D+  R+ +A  E+S  L  +P+  GY   LA  + +  ER           RTGS+T V A+  P  D +DP  + + + +     L + +A++  +P+V+ L S+S+    L    E +      +  + + +LQR   L +I+ ++G D L+E DK+ +  A+ + E +L+Q
Sbjct:  267 KCALVYGQMNEPPGARARVALSGLTIAESFRDEGQDVLFFVDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATDMGALQERITST-------RTGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSFSRMLDPLIVGEEHY-----TVACQVQTILQRYRSLQDIIAILGMDELSEDDKLLVGRARKI-ERFLSQ 468          
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CLOPH1.349e-1929.91ATP synthase subunit beta OS=Clostridium phytoferm... [more]
ATPB_CALS81.349e-1929.31ATP synthase subunit beta OS=Caldicellulosiruptor ... [more]
ATPB_ANATD1.349e-1929.31ATP synthase subunit beta OS=Anaerocellum thermoph... [more]
VATB1_HORVU1.761e-1929.73V-type proton ATPase subunit B 1 OS=Hordeum vulgar... [more]
ATPB_XANP21.761e-1930.56ATP synthase subunit beta OS=Xanthobacter autotrop... [more]
ATPB_THEAB1.761e-1931.25ATP synthase subunit beta OS=Thermosipho africanus... [more]
ATPB_KINRD1.761e-1928.38ATP synthase subunit beta OS=Kineococcus radiotole... [more]
ATPB_CLOD61.761e-1929.61ATP synthase subunit beta OS=Clostridium difficile... [more]
ATPB_BARQU1.761e-1929.77ATP synthase subunit beta OS=Bartonella quintana G... [more]
ATPB_BARHE1.761e-1929.77ATP synthase subunit beta OS=Bartonella henselae G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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