BQ623087

Overview
NameBQ623087
Unique NameBQ623087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8171 contig Csv1_Contig8171:173..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALPK (ATP synthase subunit beta OS=Salmonella paratyphi A (strain AKU_12601) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALPC (ATP synthase subunit beta OS=Salmonella paratyphi C (strain RKS4594) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALPB (ATP synthase subunit beta OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALPA (ATP synthase subunit beta OS=Salmonella paratyphi A GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALNS (ATP synthase subunit beta OS=Salmonella newport (strain SL254) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALHS (ATP synthase subunit beta OS=Salmonella heidelberg (strain SL476) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALG2 (ATP synthase subunit beta OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALEP (ATP synthase subunit beta OS=Salmonella enteritidis PT4 (strain P125109) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALDC (ATP synthase subunit beta OS=Salmonella dublin (strain CT_02021853) GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
[Close]
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Match: ATPB_SALCH (ATP synthase subunit beta OS=Salmonella choleraesuis GN=atpD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 2 
Query:    2 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAF 664
            V+ + +LV    N P   R     TG+T+AE FRD G +V +  D+  R+  A  E+S  L  MP+  GY   LA  +    ER    K       TGS+T V AV  P  D +DP  + T + +     L +++A    +P+V+ L S S+    L    E +D          + +LQR  +L +I+ ++G D L+E DK+ +  A+ ++  +L+Q  F
Sbjct:  199 VIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTK-------TGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYD-----TARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQPFF 406
The following BLAST results are available for this feature:
BLAST of BQ623087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_SALPK3.924e-1930.77ATP synthase subunit beta OS=Salmonella paratyphi ... [more]
ATPB_SALPC3.924e-1930.77ATP synthase subunit beta OS=Salmonella paratyphi ... [more]
ATPB_SALPB3.924e-1930.77ATP synthase subunit beta OS=Salmonella paratyphi ... [more]
ATPB_SALPA3.924e-1930.77ATP synthase subunit beta OS=Salmonella paratyphi ... [more]
ATPB_SALNS3.924e-1930.77ATP synthase subunit beta OS=Salmonella newport (s... [more]
ATPB_SALHS3.924e-1930.77ATP synthase subunit beta OS=Salmonella heidelberg... [more]
ATPB_SALG23.924e-1930.77ATP synthase subunit beta OS=Salmonella gallinarum... [more]
ATPB_SALEP3.924e-1930.77ATP synthase subunit beta OS=Salmonella enteritidi... [more]
ATPB_SALDC3.924e-1930.77ATP synthase subunit beta OS=Salmonella dublin (st... [more]
ATPB_SALCH3.924e-1930.77ATP synthase subunit beta OS=Salmonella choleraesu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00178 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623087 ID=BQ623087; Name=BQ623087; organism=Citrus sinensis; type=EST; length=719bp
TGTCATGAAGCGTACAACACTTGTGGCCAACACTTCTAACATGCCTGTGG
CTGCTCGTGAGGCTTCGATTTATACAGGAATCACCATAGCTGAATATTTC
AGAGATATGGGGTACAATGTTAGCATGATGGCAGATTCAACTTCTCGTTG
GGCAGAAGCGTTGCGTGAAATTTCAGGACGGCTGGCAGAAATGCCTGCAG
ATAGTGGATATCCTGCTTACCTGGCTGCACGTTTGGCCTCATTTTATGAA
CGTGCTGGGAAAGTTAAATGTCTTGGTGGACCAGAACGTACTGGTAGTGT
CACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCTG
TAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAAG
AAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTTA
CTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCGG
ATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGAT
GACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAGG
AGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTTG
CTCAAAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTCT
GTTTGGATGATGCGTACAT
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