BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CLOAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium acetobutylicum GN=ispF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.264e-31
Identity = 64/132 (48.48%), Postives = 92/132 (69.70%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            RVG G+D+H+L     LI+GG+ + + +G   HSD DVL+H ++D+ILGA GL DIG++FPDSD K+KG  S   +KE   L+ + GY+IGN+D+T+I Q+PK+SPY E I+ +L  +L  D    N+KA T
Sbjct:    2 RVGIGYDVHKLVENRKLILGGVEIQYSKGLLGHSDADVLVHAIIDSILGAAGLGDIGKLFPDSDNKYKGISSLKLLKEVNALIKDKGYKIGNIDSTIIAQKPKISPYIEDIKKSLCNVLDIDLGSINIKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BURS3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia sp. (strain 383) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.264e-31
Identity = 65/136 (47.79%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            + FR+G G+D+H+L  G PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+D  +KGA S V ++E V  ++ AG+ I N+D+T+I Q PKL+P+ + +R N++  LG      N+KAKT+
Sbjct:    1 MDFRIGQGYDVHQLVEGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDAAFKGADSRVLLRECVARINAAGFTIQNVDSTVIAQAPKLAPHIDGMRANIAADLGLPLDRVNVKAKTN 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_SYNP6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.651e-31
Identity = 61/134 (45.52%), Postives = 92/134 (68.66%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            FR+G+G+D+HRL  G PLI+GGI + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DP+WKGA S   + +  +L+ + G+ IGNLD+ ++ ++PKL P+   +R  L+++L  +P    +KA T+
Sbjct:    4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEPDQIGIKATTN 137          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_SYNE7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.651e-31
Identity = 61/134 (45.52%), Postives = 92/134 (68.66%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            FR+G+G+D+HRL  G PLI+GGI + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DP+WKGA S   + +  +L+ + G+ IGNLD+ ++ ++PKL P+   +R  L+++L  +P    +KA T+
Sbjct:    4 FRIGNGYDIHRLVEGRPLILGGIQLEHSLGLDGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPQWKGADSLKLLAQVNQLIRDRGWTIGNLDSVVVAEQPKLKPHIAAMRDRLAKVLELEPDQIGIKATTN 137          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_SYMTH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Symbiobacterium thermophilum GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.651e-31
Identity = 61/132 (46.21%), Postives = 87/132 (65.91%), Query Frame = 3
Query:  249 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            +G G+D+HRL PG PL++GG+ +P +RG E HSD DV LH ++DA+LGA GL DIG  FP +DP W GA S   ++  V L+ E GY   N D T++ +RPK+ PY   +R  +  +LG +P   ++KA T+
Sbjct:    3 IGFGYDVHRLVPGRPLVLGGVEIPSKRGLEGHSDADVALHALMDALLGAAGLGDIGTHFPPTDPAWAGANSLDLLRRVVGLLAEEGYRPVNCDITVVAERPKIGPYVPAMRERIGAVLGVEPRRVSIKATTN 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BURXL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.651e-31
Identity = 63/136 (46.32%), Postives = 92/136 (67.65%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            + FR+G G+D+H L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  + DIG+ F D+D K+ GA S V ++E    +  AG+ I N+D++++ Q PKL+P+ E +R N++  LG      N+KAKT+
Sbjct:    1 MDFRIGQGYDVHALVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAAMGDIGRHFSDTDAKFAGADSRVLLRECFARVTAAGFSIANVDSSVVAQAPKLAPHIEGMRANIAADLGLPVERVNVKAKTN 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_ALHEH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.651e-31
Identity = 66/133 (49.62%), Postives = 90/133 (67.67%), Query Frame = 3
Query:  246 RVGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            RVG GFD HR  EPG PLI+GG+ VPHERG  AHSDGDVL+H V D +LGA G  D+G  FPDSD  +KG  S + +++A++ +   G+ + N+DATLI Q P+++P+   +R +L+  L   P   N+KA T
Sbjct:    3 RVGQGFDAHRFGEPGTPLILGGVQVPHERGLAAHSDGDVLMHAVTDGLLGAAGEGDLGTHFPDSDDAYKGIDSRILLRDALQRVRAGGWRVVNVDATLIAQAPRMNPHVGAMRDHLAADLEVAPSAVNVKATT 135          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_SILST (Bifunctional enzyme ispD/ispF OS=Silicibacter sp. (strain TM1040) GN=ispDF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.651e-31
Identity = 60/132 (45.45%), Postives = 90/132 (68.18%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G+G+D+HR  PG  +++ G+ VPHERG + HSD DV +H V DA+ GA+   DIG+ FP SDP+WKGA S +F++ AV L    G+ I N+D TL+ + PK+ P+ E +R  ++E++G D    ++KA T
Sbjct:  227 RLGNGYDVHRFGPGDHVMLCGVQVPHERGLQGHSDADVGMHAVTDALYGAMAEGDIGRHFPPSDPQWKGAASDIFLRHAVELARSKGFTINNVDCTLVCEYPKVGPHAEAMRARMAEIMGMDMGRLSIKATT 358          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_VIBCM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.156e-31
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHGFD+HR     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R +   GY +GN D T+I Q PK++PY + +   ++E L  D    N+KA T
Sbjct:    3 RIGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKAQGYVLGNADVTIIAQAPKMAPYIQAMCAAIAEDLETDLGNINVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_VIBCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio cholerae GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.156e-31
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHGFD+HR     P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R +   GY +GN D T+I Q PK++PY + +   ++E L  D    N+KA T
Sbjct:    3 RIGHGFDVHRFGGEGPIIIGGVKIPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKAQGYVLGNADVTIIAQAPKMAPYIQAMCAAIAEDLETDLGNINVKATT 134          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_CLOAB1.264e-3148.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURS31.264e-3147.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYNP61.651e-3145.522-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYNE71.651e-3145.522-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYMTH1.651e-3146.212-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURXL1.651e-3146.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ALHEH1.651e-3149.622-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SILST1.651e-3145.45Bifunctional enzyme ispD/ispF OS=Silicibacter sp. ... [more]
ISPF_VIBCM2.156e-3148.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBCH2.156e-3148.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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