BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_LARHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispF PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.034e-33
Identity = 65/132 (49.24%), Postives = 96/132 (72.73%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G G+D+HRL  G PL++GG+ +P ++G + HSD D L H + DA+ GA  L DIG+ FPD+D ++KGA S V ++EAVR + EAG++I N+D+T+I Q P+L+PY E +R++L+  LG  P   N+KAKT
Sbjct:    4 RIGQGWDVHRLVEGRPLVLGGVTIPFDKGLDGHSDADALCHAITDALFGAAALGDIGRHFPDTDLEFKGADSRVLLREAVRRVREAGFDIVNVDSTVIAQAPRLAPYVEAMRSHLAADLGLSPDRVNVKAKT 135          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BACCN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ispF PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.034e-33
Identity = 67/133 (50.38%), Postives = 92/133 (69.17%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FR+G GFD+H    G PLIIGGI +P+E+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL       N+KA T
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPYEKGLLGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_AQUAE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Aquifex aeolicus GN=ispF PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.034e-33
Identity = 64/134 (47.76%), Postives = 92/134 (68.66%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAK 638
            +  R+G GFD H    G  LI+GG+ +  + G + HSDGD LLH + DAILGALG  DIG+IF D+DP+WK APS +F+++A+ +M E G+ I N+D  ++  RPK++P+KE I+ +LS+LLG      +LK K
Sbjct:    1 MELRIGFGFDSHEFVEGKLLILGGVEIEKDYGLKGHSDGDALLHAITDAILGALGERDIGEIFKDTDPRWKNAPSRIFLEKALEVMSEKGFNISNIDCVIVADRPKIAPHKERIKESLSKLLGIPKERISLKGK 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PECCP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ispF PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.763e-33
Identity = 67/132 (50.76%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHGFD+H+     PL+IGG+ +P+ +G  AHSDGDV+LH V DA+LGA  L DIG++FPD+DP +KGA S   ++EA R ++E GY++GNLD T+I Q PK++P+   +R NL+E L       N+KA T
Sbjct:    2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINEKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAEDLLCHMDDVNVKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_THETN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispF PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.303e-33
Identity = 67/132 (50.76%), Postives = 93/132 (70.45%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            RVG G+D+HR E G  L++GGI +P E+G + HSDGDVL+H ++D ILGA GL DIG+ FPD+D  +K   S + +K  + L+ E  Y + N+D  ++ +RPKLSPYK+ IRT+L+ELLG      N+KAKT
Sbjct:    5 RVGIGYDVHRFEEGKKLMLGGIEIPFEKGLKGHSDGDVLIHALIDGILGAAGLGDIGEHFPDTDVAYKEVDSKILLKRVLELVSE-HYVVNNVDCIVVTERPKLSPYKDRIRTSLAELLGVSKERVNVKAKT 135          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_ERWCT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ispF PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.303e-33
Identity = 66/132 (50.00%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHGFD+H+     PL+IGG+ +P+ +G  AHSDGDV+LH V DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +++ GY++GNLD T+I Q PK++P+   +R NL+E L       N+KA T
Sbjct:    2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINDKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAEDLQCHMDDVNVKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BURTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=ispF PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.303e-33
Identity = 65/136 (47.79%), Postives = 95/136 (69.85%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++  LG      N+KAKT+
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECAARVAQAGFSIRNVDSTIIAQAPKLAPHIDAMRANIAADLGLPLDRVNVKAKTN 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CUPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ispF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.929e-33
Identity = 71/138 (51.45%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  237 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            +PF  RVG G+D+H L PG  LI+GG+ +PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+D ++ GA S   ++EA R + EAGYEIGN+DAT+I Q PKL+P+   +  NL+E L       N+KAKT+
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRALLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAEDLAIARGRCNVKAKTN 139          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BORPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ispF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.929e-33
Identity = 67/136 (49.26%), Postives = 92/136 (67.65%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            +PFRVG G+D+H L  G PLIIGG+ +PH  G + HSD DVLLH V DA+LGA GL DIG+ FPD+DP ++GA S V +++AV  +  AG+   N+DAT+  Q PK+ P+   +  N++   G D    N+KAKT+
Sbjct:    3 VPFRVGQGYDVHALVAGRPLIIGGVTIPHTHGLQGHSDADVLLHAVTDALLGAAGLGDIGRHFPDTDPAYRGADSRVLLRDAVAKVRAAGWAPVNIDATVHAQAPKIGPHAGAMVANIAADAGIDSASVNIKAKTN 138          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.131e-33
Identity = 63/132 (47.73%), Postives = 95/132 (71.97%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q PK++P+ ET+R +++E LG      N+KA T
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGSIAEDLGVAVDQVNVKATT 133          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_LARHH1.034e-3349.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCN1.034e-3350.382-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AQUAE1.034e-3347.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PECCP1.763e-3350.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THETN2.303e-3350.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ERWCT2.303e-3350.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURTA2.303e-3347.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CUPTR3.929e-3351.452-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORPD3.929e-3349.262-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEAB5.131e-3347.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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