BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_AZOC5 (Bifunctional enzyme ispD/ispF OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ispDF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.651e-26
Identity = 57/131 (43.51%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAK 638
            R G GFD+H   PG  +++GG+ +P +RG + HSD DV LH + DA+LGAL   DIG  FP SDP+WKGA S  F+  A+  + E G  + +LD TLI + PK+ P+++ IR  ++ +   D P G +  K
Sbjct:  231 RTGTGFDVHAFGPGDHVMLGGVAIPFDRGLDGHSDADVGLHALTDAVLGALADGDIGAHFPPSDPQWKGATSDRFLAFAIERVRERGGIVAHLDLTLICEAPKVGPHRDAIRAEIARI--CDLPLGRVSVK 359          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CHLP8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=ispF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.075e-26
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R+G G D+H+      LI+GG+ VP   G   HSD DVLLH + DA+LGA  L DIG+ FPD+ P +K A S   +K   +L+++ GY+  N+D  L+L++PK++PY E +R N++  L  D    ++KA T+
Sbjct:    2 RIGIGIDVHQFSEDRKLIVGGVEVPSPVGLLGHSDADVLLHAISDALLGAAALGDIGKHFPDTSPDYKDADSMELLKHVGKLLEQEGYKPVNIDTMLLLEKPKIAPYIEQMRRNIASCLDMDMNDVSVKATTN 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BACTN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides thetaiotaomicron GN=ispF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.075e-26
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +  RVG GFD+H+L  G  L +GGI + H +G   HSD DVLLH V DA+LGA  + DIG  FPD+  ++K   S + +K+ V L+   GY +GN+DAT+  +RPKL  +   ++  ++ ++G D    ++KA T
Sbjct:    1 MKIRVGFGFDVHQLVEGRELWLGGIRLEHSKGLLGHSDADVLLHTVCDALLGAANMRDIGYHFPDTAGEYKNIDSKILLKKTVELIATKGYRVGNIDATICAERPKLKAHIPLMQETMAAVMGIDAEDISIKATT 135          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMC5 (Bifunctional enzyme ispD/ispF OS=Campylobacter curvus (strain 525.92) GN=ispDF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.075e-26
Identity = 57/130 (43.85%), Postives = 83/130 (63.85%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G GFD H  E G  L + G  + +E G +AHSDGDV LH + DAILGA GL DIG++FPD+D ++KG  S + ++EA + +   G+E+ N D T++ +RPK+S +K  +  N++  L   P   N+KA T
Sbjct:  214 GIGFDAHEFERGRELWLCGEKIEYEFGLKAHSDGDVALHALTDAILGAAGLGDIGELFPDTDAEFKGISSLLLLQEAYKKVQSVGFELVNADITIMAERPKISKFKRKMEANIAGALNLAPNRINVKATT 343          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_RHORT (Bifunctional enzyme ispD/ispF OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ispDF PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.934e-26
Identity = 54/132 (40.91%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G GFD+HRL PG  + + GI +PH  G   HSD D  +H + DA+LG L   DIG+ FP SD +WKGA S++F++ A  L+   G  I N+D T++ ++PK+ P++  +   L+E+L        +KA T
Sbjct:  228 RIGSGFDVHRLGPGDFVTLNGIRIPHSHGLVGHSDADAPMHALTDALLGCLNAGDIGRHFPPSDMRWKGADSAIFLRHAAALITALGGRILNVDITILCEQPKIGPHRARMSARLAEILEISATRVAVKATT 359          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMFF (Bifunctional enzyme ispD/ispF OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=ispDF PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.934e-26
Identity = 53/130 (40.77%), Postives = 85/130 (65.38%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G+GFD+H  + G  + + G+ +P+ +   AHSDGDV LH + DA+LGA   PDIG+++PD+D K+K   S + ++ +V L+   G++I N D T+I Q PK+SPYK+ +   ++++LG      N+KA T
Sbjct:  213 GNGFDVHAFKEGDFITLCGVKIPYSKAFIAHSDGDVALHALCDALLGAASAPDIGELYPDNDSKFKDIDSKILLQNSVNLIRSIGFDIINADITIIAQSPKISPYKDAMAKIVADILGIPLHKVNIKATT 342          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans GN=ispF PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 59/135 (43.70%), Postives = 84/135 (62.22%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +R+G+G D H+LE     PLI+GGI    E     HSD D++LH + DAILGAL L DIGQ FPD+DP  K   S + + + + LM E  +++ N+D T+I +RPK++P K+ I  +LS LL       ++KA T
Sbjct:    2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKITPLKDRITKSLSNLLNLPLDCISVKATT 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispF PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 59/135 (43.70%), Postives = 84/135 (62.22%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +R+G+G D H+LE     PLI+GGI    E     HSD D++LH + DAILGAL L DIGQ FPD+DP  K   S + + + + LM E  +++ N+D T+I +RPK++P K+ I  +LS LL       ++KA T
Sbjct:    2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKIAPLKDRITKSLSNLLNLPLDCISVKATT 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_TREPA (Bifunctional enzyme ispD/ispF OS=Treponema pallidum GN=ispDF PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            RVG G D+H L  G PLI+ GI++P ++G + HSD DVL H  +DA+LGA GL DIG  FP  D +WK A S   ++   +L+  A + + NLDA + L++P L P++E +R +L++ L        +KAKT
Sbjct:  244 RVGLGTDMHALCAGRPLILAGIHIPSKKGAQGHSDADVLAHASIDALLGAAGLGDIGTFFPSCDGRWKDAHSCALLRHTWQLVRAACWRLVNLDAVVCLEQPALHPFREAMRASLAQALDTHVTRVFVKAKT 375          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPG (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori (strain G27) GN=ispDF PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  249 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DA+LGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  +LS+LLG +    +LKA T
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAVLGAIKGGDIGEWFPDNDPKYKNASSKELLKVVLDFSQSIGFELLEMGATIFSEIPKITPYKPAILESLSQLLGLEKSQISLKATT 379          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_AZOC54.651e-2643.51Bifunctional enzyme ispD/ispF OS=Azorhizobium caul... [more]
ISPF_CHLP86.075e-2642.112-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACTN6.075e-2641.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CAMC56.075e-2643.85Bifunctional enzyme ispD/ispF OS=Campylobacter cur... [more]
ISPDF_RHORT7.934e-2640.91Bifunctional enzyme ispD/ispF OS=Rhodospirillum ru... [more]
ISPDF_CAMFF7.934e-2640.77Bifunctional enzyme ispD/ispF OS=Campylobacter fet... [more]
ISPF_LEPIN1.036e-2543.702-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPIC1.036e-2543.702-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_TREPA1.036e-2543.18Bifunctional enzyme ispD/ispF OS=Treponema pallidu... [more]
ISPDF_HELPG1.036e-2543.51Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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