BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PSEHT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ispF PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHGFD+H+     PL IGG  + + +G  AHSDGDV +H + DAILGAL + DIG+ FPD+  +++   S + ++  V L  E GY +GN D T++ Q PK+ P+ + +R+NL+  L  +    N+KA T
Sbjct:    3 RIGHGFDVHKFGGVGPLTIGGEKIDYPQGFLAHSDGDVAIHALCDAILGALAMGDIGKHFPDTASEYENIDSRILLRHVVSLAKEQGYVLGNGDVTIVAQAPKMLPHIQAMRSNLASDLNCELSQINVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_WOLTR (Bifunctional enzyme ispD/ispF OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=ispDF PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYP-----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +RVG G+D+HR           + I G+ + ++   EAHSDGDV +H VVDAILGALG  DIG  FP S P+WK   SS F+  A +   E GY + NLD T++ + PK+SPYK  ++  +S+ L  D    N+KA T
Sbjct:  239 YRVGTGYDIHRFIKAQGKAKSFIKICGVEIEYDMKIEAHSDGDVAIHAVVDAILGALGCGDIGAHFPPSFPEWKDRNSSHFLDFAAKKAKEKGYSVSNLDITIVCEEPKISPYKVAMKKFISKTLEIDSEFVNVKATT 376          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_BARBK (Bifunctional enzyme ispD/ispF OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ispDF PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 53/133 (39.85%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R G+G+D+H  E G+ + + GI +P E+    HSD DV LH + DA+L   G  DIG  FP SDP+WK A S +F+  A+ ++ +A   I N+D TLI ++PK+ PY+  +  NL ++L       ++KA T+
Sbjct:  237 RTGNGYDVHSFEDGHYITLCGIKIPFEKKLNGHSDADVALHALTDALLATQGAGDIGTHFPPSDPQWKNASSEIFLHHAIEIIKKAEGRIANVDITLIAEKPKIGPYRHIMTENLMKILKISTDRISIKATTN 369          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PELLD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelodictyon luteolum (strain DSM 273) GN=ispF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R+G G D+H    G  LI+GG+++P  +G E HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K   RL+ + GY   N+DA L+L+ PK++PY   +R N++  L  D    ++KA T+
Sbjct:    2 RIGIGIDVHPFAEGRKLIVGGVDIPSPKGLEGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSAEYKDIDSMILLKHVGRLLTKNGYRTVNVDAMLLLEAPKIAPYVADMRRNIARCLDIDTSLVSVKATTN 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJJ (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D    N+KA T
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATT 342          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJ8 (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D    N+KA T
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATT 342          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_BARHE (Bifunctional enzyme ispD/ispF OS=Bartonella henselae GN=ispDF PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R G+G+D+H  E G  LI+ GI +P  +    HSD DV LH + DA+L   G  DIG  FP SDP+W+   S +F++ A+ ++ +AG  I N+D TLI + PK+ PY+  +  NL  +L   P   ++KA T+
Sbjct:  237 RTGNGYDVHSFEEGNSLILCGIKIPFHKKLNGHSDADVALHALTDALLATRGAGDIGTHFPPSDPQWQNVSSEIFLRHALDIVKQAGGRIANVDITLIAEEPKIGPYRHAMVGNLMNMLTILPDRISIKATTN 369          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_SYNAS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=ispF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.308e-25
Identity = 55/133 (41.35%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            RVG G+D HR      LI+GG+ +PHE G   HSD D L H + DA+LGA+   DIG  FPDSDP + G  S   + + + ++D+ G+ I  +D+T+I++RPKL PY   +++ ++ +L       N+KAKT+
Sbjct:    2 RVGCGYDSHRWAAKRKLILGGVEIPHEFGLTGHSDADALTHAICDALLGAISEGDIGFQFPDSDPAYSGISSLKLLSKILEMVDKKGFAIDYIDSTVIMERPKLMPYIPDMKSKIAGVLKMPSDRINIKAKTN 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_WOLSU (Bifunctional enzyme ispD/ispF OS=Wolinella succinogenes GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.308e-25
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G GFD+H    G  L + G+N+P     +AHSDGDV +H ++DA+LGA G  DIG+ FPDSD  +KG  S++ ++E ++ +   G+E+ N D T++ Q PKLSPYKE +   L E++       ++KA T
Sbjct:  216 GSGFDVHAFMEGEGLRLAGVNIPAPVTFKAHSDGDVAIHALIDALLGAAGAGDIGEWFPDSDLAYKGVDSTLLLQEVIKFIRGIGFELINADLTIMAQAPKLSPYKEAMERRLGEVMEVSRQRISVKATT 345          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJR (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni (strain RM1221) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.308e-25
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D    N+KA T
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATT 342          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PSEHT1.353e-2542.422-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_WOLTR1.353e-2544.20Bifunctional enzyme ispD/ispF OS=Wolbachia sp. sub... [more]
ISPDF_BARBK1.353e-2539.85Bifunctional enzyme ispD/ispF OS=Bartonella bacill... [more]
ISPF_PELLD1.768e-2542.112-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CAMJJ1.768e-2542.31Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_CAMJ81.768e-2542.31Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_BARHE1.768e-2540.60Bifunctional enzyme ispD/ispF OS=Bartonella hensel... [more]
ISPF_SYNAS2.308e-2541.352-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_WOLSU2.308e-2542.31Bifunctional enzyme ispD/ispF OS=Wolinella succino... [more]
ISPDF_CAMJR2.308e-2542.31Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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