BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJE (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni GN=ispDF PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.308e-25
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D    N+KA T
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATT 342          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PROVI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ispF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 53/133 (39.85%), Postives = 86/133 (64.66%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R+G G D+H  + G  LI+GG+++P  +G + HSD DVLLH V DA+LGA  L DIG  FPD+ P++K   S + +K   +L+++ G+   N+DA L+L+ PK++P+   +R N++  L  +    ++KA T+
Sbjct:    2 RIGIGIDVHSFKEGRKLIVGGVDIPSPKGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPDTSPEFKDIDSMILLKHVGKLLEKNGWRTVNVDAMLLLEAPKIAPFVVDMRKNIARCLQIETDLVSVKATTN 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_LAWIP (Bifunctional enzyme ispD/ispF OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=ispDF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 58/138 (42.03%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  249 VGHGFDLHRL-------EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            VG+G+D+H+        +P   + +GGI++P+     AHSDGDVLLH ++DA+LG +G  DIG  FPDSD ++ G  S++ +   +  + E+  +I ++DAT++ Q PK+S Y+E IR+NLS LL  D    N+KA T
Sbjct:  237 VGYGYDVHKYVTEDQINQPIRSMRLGGISIPNAPNVVAHSDGDVLLHALMDALLGCIGGGDIGLHFPDSDKRYDGINSAILLDHVLTKVLESSIKIVHMDATIVAQLPKISQYREAIRSNLSRLLDLDLANVNIKATT 374          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_AGRT5 (Bifunctional enzyme ispD/ispF OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ispDF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 53/133 (39.85%), Postives = 86/133 (64.66%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R G+G+D+H+LE G  + + GI + H++  + HSD DV LH + DA+L   G  DIG  FP SDP+WKGA S +F++ A +++ + G  I N D +LI + P++ P+++ +R  LS++LG      ++KA T+
Sbjct:  241 RTGNGYDVHQLEAGDGVTLCGIFIEHDQRLKGHSDADVALHALTDALLATCGAGDIGDHFPPSDPQWKGAASRIFLEHAAKVVRDNGGTIMNADVSLIAEAPRIGPHRQAMREALSDMLGIALERCSVKATTN 373          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PELTS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ispF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.143e-25
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            RVG G+D+H+L  G PL++GG+++P  +G   HSD DVL H V+DA+LGA G  DIG+ FPD+D ++KG  S   +     ++   G  + N+D+ ++ Q PKLSP+ E ++  ++  L   P   ++KA T
Sbjct:    2 RVGFGYDVHKLVEGRPLVLGGVSIPFVKGLLGHSDADVLAHAVMDALLGAAGAGDIGRHFPDNDGRYKGISSMKLLARVGDILSRQGLAVVNIDSVVVAQGPKLSPFIEEMQKRMAGALQIQPSQVSVKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CHLPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=ispF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.143e-25
Identity = 54/133 (40.60%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R G G D+H    G  L+IGG+ +P  +G + HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K   +L+D+ G+ I N+DA L+L+ PK++ Y   +R N++  LG +    ++KA T+
Sbjct:    2 RTGIGIDVHPFAEGRKLVIGGVEIPSAKGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKHVKKLLDKEGFRIVNIDAMLLLEAPKIASYINEMRKNIARCLGLELNAVSVKATTN 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMHC (Bifunctional enzyme ispD/ispF OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ispDF PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.143e-25
Identity = 56/130 (43.08%), Postives = 82/130 (63.08%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G+GFD+H    G  + +GG+ +P E     HSD D  +H ++DAILGA GL DIG++FPD+D  +KG  S + +++ V  +   G++I N D T+I Q+PK+SPYKE +   LSE+L       N+KA T
Sbjct:  215 GNGFDVHAFAKGEFITLGGVKIPCEYSLVGHSDADAAIHALMDAILGACGLGDIGELFPDTDDSFKGIDSKILLQKVVNFVHLLGFKIINADITIIAQKPKISPYKEKMCEILSEILQTSRV--NVKAST 342          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_SACD2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ispF PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G G D+H    G  ++IGG+ +P+ERG  AHSDGDVLLH + DA+LGA  L DIG+ FPD+D  +K A S   ++     +   GY + N D T++ Q PK++P+   +R  ++E L       N+KA T
Sbjct:    2 RIGQGVDVHAFGDGDKIVIGGVVIPYERGLVAHSDGDVLLHALCDALLGAAALGDIGKHFPDTDSAYKNACSRTLLRMVYSKLKAKGYSLVNADMTIVAQAPKMAPHISDMRAKIAEDLDTHIDNINVKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_GLOVI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gloeobacter violaceus GN=ispF PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R+G+G+D HRL  G  LI+GG+ +P+  G   HSD D+L H + DA+LGA  L DIG+ FP  DP+W+   S + + + + L+   G  + N+DA ++ +RPKL+P+   IR +L+  LG      ++KA T+
Sbjct:    9 RIGNGYDFHRLVEGRRLILGGVEIPYRLGLLGHSDADLLTHAITDALLGAACLGDIGRHFPPGDPQWQDVSSLLLLSKVLELVRGRGLRLSNVDAVVVAERPKLAPHIPAIRQSLAGALGLPLDRLSVKATTN 141          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_RUBXD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=ispF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 56/136 (41.18%), Postives = 86/136 (63.24%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEP---GYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +RVG G D+H       G  L++GG+ +P ERG   HSD DVL H V DA+LGA GL DIG  FPD+D +++ A S   ++EA R++   G+E+ N+DA +I +RP++  ++E +R NL+  LG +    +++  T
Sbjct:    4 YRVGLGVDVHAFADPAEGRQLVLGGVRIPSERGLRGHSDADVLAHAVTDALLGAAGLEDIGHYFPDTDERFRDADSIWLLREARRIVG-GGWEVVNVDAVVICERPRIREHREKMRENLAAALGVEASRVSVRGTT 138          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_CAMJE2.308e-2542.31Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPF_PROVI3.938e-2539.852-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_LAWIP3.938e-2542.03Bifunctional enzyme ispD/ispF OS=Lawsonia intracel... [more]
ISPDF_AGRT53.938e-2539.85Bifunctional enzyme ispD/ispF OS=Agrobacterium tum... [more]
ISPF_PELTS5.143e-2540.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CHLPD5.143e-2540.602-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CAMHC5.143e-2543.08Bifunctional enzyme ispD/ispF OS=Campylobacter hom... [more]
ISPF_SACD26.717e-2541.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GLOVI6.717e-2539.852-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RUBXD1.146e-2441.182-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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