BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_NEOSM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Neorickettsia sennetsu (strain Miyayama) GN=ispF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 56/141 (39.72%), Postives = 87/141 (61.70%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYP-----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGAL---GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +RVG G+D+H+++         +++ G++VP E    AHSDGDV LH +VDA+LGA    G  DIG +FPD+D KW+G  SS F++  V L+  AGY + N D T++ + P++  YK  ++  +++LL       N+KA T
Sbjct:    2 YRVGFGYDVHKIDKPVKTGNTCIVLCGVSVPCEYKVIAHSDGDVALHALVDALLGAACIEGANDIGMLFPDTDEKWRGKSSSYFVEHVVTLIQRAGYVVNNADLTIVCETPRIQQYKSEMQQQVADLLCVRKEQINVKATT 142          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_SULDN (Bifunctional enzyme ispD/ispF OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=ispDF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 54/130 (41.54%), Postives = 80/130 (61.54%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G GFD+H  +    + +GGI +  E G  AHSDGDV +H ++DA+LGA G+ DIG +FPD+D K+KGA S   +   V  +   G+ I N+D T+  ++P++  YK  +R  +S +LG D    N+KA T
Sbjct:  228 GVGFDVHAFDDKGEMFLGGIKIDSEYGFLAHSDGDVAIHALIDALLGAAGMGDIGMMFPDNDVKYKGADSKELLGTLVTKLRHFGFVIVNVDITIAAEKPRIGNYKMAMRKKISSILGIDAQRVNIKATT 357          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_NITSB (Bifunctional enzyme ispD/ispF OS=Nitratiruptor sp. (strain SB155-2) GN=ispDF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G+G D+H       L + GI +P+++G   HSD DV +H ++DA+LGA G  DIG++FPDSD  +K   S   + E VRL+   G+ I ++D T++ Q PK+ P+KE ++ +L +LL       NLKA T
Sbjct:  213 RIGNGLDVHAFCEDRKLYLCGIEIPYDKGLAGHSDADVAIHALIDALLGAAGFGDIGELFPDSDETYKDIDSKKLLCETVRLLRACGFVIEHVDLTIVAQNPKIGPFKEKMKESLHDLLQIPYHLINLKATT 344          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PELPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ispF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.496e-24
Identity = 53/133 (39.85%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R+G G D+H    G  L+IGG+++P   G + HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K+  +L+++ GY+  N+DA L+L+ PK++PY   +R N++  L  +    ++KA T+
Sbjct:    2 RIGIGIDVHPFAEGRKLVIGGVHIPGHNGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKQVRKLLEKHGYQTVNIDAMLLLEEPKIAPYITGMRKNIARCLDIEIGMVSVKATTN 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_GLUOX (Bifunctional enzyme ispD/ispF OS=Gluconobacter oxydans GN=ispDF PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.496e-24
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            RVG G+D+H  E G  LI+ GI VPH +G   HSD DV +H + DAI GAL   DIG+ FP SD KWK   S+ F+  A   + E G  + N D TLI +RPK+ P+ E +R  L++LL       ++KA T
Sbjct:  228 RVGLGYDVHAFEEGRKLILCGIEVPHTKGLAGHSDADVGIHTLCDAIYGALAEGDIGRHFPPSDNKWKDMDSARFLVHAGERIRERGGFLVNADVTLICERPKIGPHAEAMRNRLADLLKVSVSRISVKATT 359          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_WIGBR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Wigglesworthia glossinidia brevipalpis GN=ispF PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.954e-24
Identity = 56/133 (42.11%), Postives = 87/133 (65.41%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            RVGHGFD+H+    Y PLI+GG+++P+ +G  +HSDGDV++H ++D++LGA  L DIG +FP++D K+K   S + ++     + +  Y+IGN+D TL L+ PK+S Y   I   +S  L       N+K+KT
Sbjct:    2 RVGHGFDIHKFGKIYKPLILGGVHIPYCKGVVSHSDGDVIIHSIIDSLLGASSLGDIGILFPNNDIKYKNINSCILLQVVWNCIKKK-YKIGNIDVTLFLEYPKISSYTNKICLCISNCLKCKTDVINIKSKT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJD (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.954e-24
Identity = 54/130 (41.54%), Postives = 83/130 (63.85%), Query Frame = 3
Query:  252 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA  L DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D    N+KA T
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAVLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATT 342          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_PELUB (Bifunctional enzyme ispD/ispF OS=Pelagibacter ubique GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            + G GFD+HRL P   L +GG+ +P   G   HSDGD +LH V DAILGA  + DIG+ F D + K+K   S++ + E ++   + GY I NLD  +I Q+PK+  YK+ I   ++++    P   N+K KT
Sbjct:  215 KFGIGFDVHRLVPNKKLYLGGVKIPSPIGTLGHSDGDPVLHAVTDAILGACSMGDIGEKFSDKNKKFKNIRSTILLSEIIKQTLKKGYLINNLDINIITQKPKIQKYKKQILNCIAKICNISPTQINIKGKT 346          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_HELHP (Bifunctional enzyme ispD/ispF OS=Helicobacter hepaticus GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  249 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +G+G D+H+ E    + +GG+ +    G +AHSDGDV+LH + DAILGA+G  DIG+ FPD+D  +K A S + + E        GYE+ N D ++I Q PK++PYK  +R  ++ +L       N+KA T
Sbjct:  225 IGNGIDVHQFEKNKQMWLGGVEIESPFGFKAHSDGDVVLHALSDAILGAIGGGDIGEWFPDTDETYKNADSKMMLSEIYTFAQSVGYELYNADISIIAQTPKIAPYKSAMRECIARILRVPNAHINIKATT 355          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVV (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  249 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++ Q PKLSP+++ IR N++ LL       N KA T
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQVPKLSPWRDKIRANVARLLDLPVTSVNFKATT 369          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_NEOSM1.146e-2439.722-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SULDN1.146e-2441.54Bifunctional enzyme ispD/ispF OS=Sulfurimonas deni... [more]
ISPDF_NITSB1.146e-2440.91Bifunctional enzyme ispD/ispF OS=Nitratiruptor sp.... [more]
ISPF_PELPB1.496e-2439.852-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_GLUOX1.496e-2445.45Bifunctional enzyme ispD/ispF OS=Gluconobacter oxy... [more]
ISPF_WIGBR1.954e-2442.112-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CAMJD1.954e-2441.54Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_PELUB2.552e-2440.91Bifunctional enzyme ispD/ispF OS=Pelagibacter ubiq... [more]
ISPDF_HELHP2.552e-2440.46Bifunctional enzyme ispD/ispF OS=Helicobacter hepa... [more]
ISPDF_DESVV2.552e-2441.98Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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