BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVH (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ispDF PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  249 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++ Q PKLSP+++ IR N++ LL       N KA T
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQVPKLSPWRDKIRANVARLLDLPVTSVNFKATT 369          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_UNCTG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ispF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 49/132 (37.12%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  249 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            +G G+D HRL+ G  LI+GG+ +    G + HSD DVL+H ++DA+LGA GL DIG  FPD DPK+K   S   ++   + + +  + + N+D T+I++ PK+ P+   ++ N+S ++        +KA T+
Sbjct:    3 IGFGYDAHRLKKGRELILGGVKILTSEGLDGHSDADVLIHALMDALLGAAGLNDIGHFFPDMDPKYKNVSSISLLESVYKELKKQNFSVNNVDITVIVEAPKICPFIADMKENISRVIELKRERIGIKATTN 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CHLCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium chlorochromatii (strain CaD3) GN=ispF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R+G G D+H    G  L+IGG+ +P   G + HSD DVLLH + DA+LGA  L DIG  FP++  ++K   S + +K   +L+ E GY   N+DA L+L+ PK++PY + +R N+++ LG       +KA T+
Sbjct:    2 RIGIGIDVHPFAAGRKLVIGGVYIPGHDGLDGHSDADVLLHAISDALLGAAALGDIGLHFPNTSAEFKDIDSMILLKHVGKLLAEHGYAPVNVDAMLLLEAPKIAPYIQQMRQNIADALGLQVGDVAVKATTN 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_AZOPC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=ispF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 49/135 (36.30%), Postives = 86/135 (63.70%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +  R+G G+D+H L   Y L +GGI +P+E+G + HSD DVL+H + DA+LGA  + +IG  FP+++ K +   S + +K+ +  +    YE+ N D T+ +++PKL+P+   ++T L+E++  D    ++KA T
Sbjct:    1 MKIRIGFGYDVHPLVMNYNLWLGGIKIPYEKGLKGHSDADVLIHALCDALLGAADIGNIGTNFPNTNKKLRNIDSKILLKQTMSFIYSKNYELNNADITVCIEQPKLNPFIPQMKTCLAEIMQTDKGNISIKATT 135          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_DESDG (Bifunctional enzyme ispD/ispF OS=Desulfovibrio desulfuricans (strain G20) GN=ispDF PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 55/132 (41.67%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  249 VGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            VG G+D+HR    G P+ +GG+ +    G  AHSDGDVLLH + DA+LG +GL DIG +FPD+D  +  A S+V + E +     AG  I ++D T+I Q P+++P+++ I  N+  +   D    NLKA T
Sbjct:  241 VGWGYDVHRFGSDGRPMKLGGVPIAGGPGVIAHSDGDVLLHALTDAVLGCMGLGDIGMLFPDTDAAYDNADSAVMLNEVLEKARNAGLLITHVDLTIITQIPRITPWRDQIHKNICRITRLDASSVNLKATT 372          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BACV8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +  RVG GFD+H+L  G  L +GGI   HE G   HSD DVL+H + DA+LGA  + DIG  FPD+  ++K   S + + E V L+   GY++GN+DAT+  +RPKL      ++  L+ L+  D    ++KA T
Sbjct:    1 MKIRVGFGFDVHQLVTGRELWLGGIKFEHELGLLGHSDADVLIHAICDALLGAANMRDIGYHFPDTAGEFKNIDSKILLAETVDLIAAKGYKVGNVDATICAERPKLKARIPEMQLVLAHLMRIDVDDVSVKATT 135          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_EHRRW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia ruminantium (strain Welgevonden) GN=ispF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.699e-24
Identity = 58/139 (41.73%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  243 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FR+G G+D+HR +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A SS F+ EA +   E GY I N D  +I ++PK+ PY   ++  +++    DP   N+KA T
Sbjct:   10 FRIGIGYDVHRFDNINNDDSNTSITICGIKINYHKKIIAHSDGDVGLHALADAILGAVGCGSIGQHFPNTDKKWKNAESSHFVIEAQKKAQERGYIISNADIIIICEQPKIMPYALEMQHYIAQFTSIDPSFINIKATT 148          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_EHRRG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia ruminantium (strain Gardel) GN=ispF PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.699e-24
Identity = 58/139 (41.73%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  243 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FR+G G+D+HR +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A SS F+ EA +   E GY I N D  +I ++PK+ PY   ++  +++    DP   N+KA T
Sbjct:   10 FRIGIGYDVHRFDNINNDDSNTSITICGIEINYHKKIIAHSDGDVGLHALADAILGAVGCGSIGQHFPNTDQKWKNAKSSHFVIEAQKKAQERGYIISNADIIIICEQPKIMPYALEMQHYIAQFTSIDPSFINIKATT 148          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_GRABC (Bifunctional enzyme ispD/ispF OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 55/132 (41.67%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G G+D+H  E G  LI+ GI VPH +G   HSD DV +H + DAI GAL   DIG+ FP ++  WK A S+ F++ A   +   G  + N D TLI ++PK++P+   +   L+ELLG      ++KA T
Sbjct:  220 RIGTGYDVHAFETGRKLILCGIEVPHHQGLAGHSDADVGIHALCDAIYGALAEGDIGRHFPPTEASWKDADSARFLRHAAERIAARGGFLANADLTLICEKPKITPHAPAMIARLAELLGVSIDKISVKATT 351          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BLOPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Blochmannia pennsylvanicus (strain BPEN) GN=ispF PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 53/132 (40.15%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G+GFD+H+     PL IGG+++P  +G +AHSDGDV++H ++DA+LGA    DIG +FPD+D K+    S   ++ A   +   G+ + N+D T+ILQ PK++ Y   ++ +LS+ L       N+KA T
Sbjct:    3 RIGYGFDVHQFGGCRPLTIGGVSIPCMKGIKAHSDGDVMMHSLIDALLGAACCGDIGSMFPDTDAKYNNIDSRKLLRIAWEKITMQGFLLENIDITVILQIPKINTYIYQMKHHLSQDLNCSVTSINIKATT 134          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_DESVH2.552e-2441.98Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]
ISPF_UNCTG4.354e-2437.122-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CHLCH4.354e-2440.602-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOPC4.354e-2436.302-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DESDG5.686e-2441.67Bifunctional enzyme ispD/ispF OS=Desulfovibrio des... [more]
ISPF_BACV87.426e-2441.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRRW9.699e-2441.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRRG9.699e-2441.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_GRABC1.267e-2341.67Bifunctional enzyme ispD/ispF OS=Granulibacter bet... [more]
ISPF_BLOPB2.161e-2340.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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