BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_DESPS (Bifunctional enzyme ispD/ispF OS=Desulfotalea psychrophila GN=ispDF PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHGFD H+L     LI+GG+ +P+  G   HSD DVL+H + DA+LGA+G  DIG+ FPDS   +K   S   ++  ++ + E  Y+IGN D ++I Q PKL+PY + ++  ++          N+KA T
Sbjct:  232 RIGHGFDAHQLVEKRRLILGGVEIPYHLGLAGHSDADVLVHALCDALLGAIGAGDIGRHFPDSSDAFKDIYSIRLLESVMQKVGELNYKIGNADISVICQAPKLAPYLKQMQEIIATSCACQISDINIKATT 363          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_MAGSA (Bifunctional enzyme ispD/ispF OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=ispDF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.686e-23
Identity = 54/133 (40.60%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLI-IGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R   G+D+HR +P      + G+ VPHE G   HSD DV LH + DA+LGA+   DIG  FP +D +WKGA S  F+  A  L+   G  I N+D T+I +RPK+ P++  +   ++E+LG      ++KA T
Sbjct:  227 RSASGYDVHRFDPAKDACWLCGVPVPHEAGLLGHSDADVGLHALTDAVLGAISAGDIGHHFPPTDARWKGAASDQFLAHAGSLVTAKGGRIVNVDVTIICERPKVGPHRAAMAARVAEILGISQDRVSVKATT 359          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_DESMR (Bifunctional enzyme ispD/ispF OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.686e-23
Identity = 58/138 (42.03%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  252 GHGFDLHRL--------EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            G+G+D+HR         +P  P+ +GG  +       AHSDGDVLLH + DA+LG +   DIG++FPDS+P +    S VF+ EA+      G  I ++D T+I Q PK+SP+ E IR N++ LLG +    NLKA T
Sbjct:  238 GYGYDVHRYADPRNPGKQPPRPMKLGGFPILGAPEVLAHSDGDVLLHALTDAVLGCVAGGDIGRLFPDSNPDFDNMASGVFLSEALLAAKAKGLTITHVDLTIIAQIPKISPHAEAIRLNVAALLGLNKEQVNLKATT 375          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=ispF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I + PK+ PY   +R+NLS  L  +    ++K+ T
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLSLDLNTEIDNISIKSTT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ispF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I + PK+ PY   +R+NLS  L  +    ++K+ T
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLSLDLNTEIDNISIKSTT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BUCA5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=ispF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I + PK+ PY   +R+NLS  L  +    ++K+ T
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLSLDLNTEIDNISIKSTT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_SPHWW (Bifunctional enzyme ispD/ispF OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=ispDF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 52/132 (39.39%), Postives = 77/132 (58.33%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R   GFD+H    G  + +GG+ + H+R    HSD DV LH + DA+LG +   DIG  FP SD +WKGA S++F+  A  L+  AG  +  +D T+I + PK+ P++  IR  ++ LLG      ++KA T
Sbjct:  225 RTAMGFDVHGFTAGDGVQLGGVRIAHDRALAGHSDADVALHALTDALLGTIAAGDIGSHFPPSDQRWKGADSAMFLAHARDLVAAAGGIVDFVDLTIICEAPKVGPHRAAIRDRIAALLGLTAGQVSVKATT 356          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_LEIXX (Bifunctional enzyme ispD/ispF OS=Leifsonia xyli subsp. xyli GN=ispDF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            R+G G D H  +P   L + G+    E G   HSDGDV+ H +VDA+L A  L DIG +F   DP++ GA   VF+ E  RL++E G+ IGN+ A ++  RPK +P +    T LS +LGA
Sbjct:  234 RIGFGTDTHAFDPSAELWLAGLRWEGEPGLAGHSDGDVVAHAIVDALLSAARLGDIGGVFGTGDPRFSGAHGEVFLTETRRLVEEEGFRIGNVSAQIVGNRPKFAPRRAEAETLLSRVLGA 354          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CELJU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=ispF PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.829e-22
Identity = 49/135 (36.30%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +  R+G G+D+H    G  ++IGG+ +PH  G  AHSDGDVLLH + DA+LGA+ L DIG+ FPD+D +++ A S   ++     + + G+++ N D T++ Q P+++ Y   +   ++  L +     N+KA T
Sbjct:    1 MSMRIGQGYDVHAFGEGEKIVIGGVVIPHHHGLVAHSDGDVLLHALCDALLGAVALGDIGKHFPDTDMQYRNADSRSLLRMVYAKVSQHGWKLANADMTIVAQAPRMASYIPHMVEVIASDLQSSASQINVKATT 135          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_ANAMM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anaplasma marginale (strain St. Maries) GN=ispF PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.829e-22
Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYP----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +PFRVG G+D+H      P    +++ G+ +   R  +AHSDGDV  H +VDA+LG +G   IG+ FP++DP+W+   S+ F+ EA       GY + N D T++ + PK+ P+   ++  +S+LLG D    N+KA T
Sbjct:    8 VPFRVGIGYDVHGFADSPPENGHIVLCGVEIAFHRKIKAHSDGDVGTHALVDALLGCVGEGSIGEHFPNTDPRWENMSSTHFLLEAQSKALAKGYAVLNFDLTIVCELPKIIPHVPKMKLFMSKLLGMDASAINIKAVT 146          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_DESPS2.161e-2340.15Bifunctional enzyme ispD/ispF OS=Desulfotalea psyc... [more]
ISPDF_MAGSA3.686e-2340.60Bifunctional enzyme ispD/ispF OS=Magnetospirillum ... [more]
ISPDF_DESMR3.686e-2342.03Bifunctional enzyme ispD/ispF OS=Desulfovibrio mag... [more]
ISPF_BUCAT1.072e-2240.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCAI1.072e-2240.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCA51.072e-2240.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SPHWW1.072e-2239.39Bifunctional enzyme ispD/ispF OS=Sphingomonas witt... [more]
ISPDF_LEIXX1.072e-2242.98Bifunctional enzyme ispD/ispF OS=Leifsonia xyli su... [more]
ISPF_CELJU1.829e-2236.302-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ANAMM1.829e-2238.132-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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