BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=ispF PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 54/135 (40.00%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  243 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FRVG+G D H+L  EP  PL++ G+ +  E     HSD DV+LH V DAILGAL L DIG  FPD+DP++K   S+  I++ + L+ E  +++ N+D T +   PK+SP +  +  +L+ +        ++KA T
Sbjct:    2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYVGDHPKISPIRAELNASLANITKLPLDCVSIKATT 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ispF PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 54/135 (40.00%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  243 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FRVG+G D H+L  EP  PL++ G+ +  E     HSD DV+LH V DAILGAL L DIG  FPD+DP++K   S+  I++ + L+ E  +++ N+D T +   PK+SP +  +  +L+ +        ++KA T
Sbjct:    2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYVGDHPKISPIRAELNASLANITKLPLDCVSIKATT 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ispF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 593
            R+G+GFD+H      PLIIGG+ +P+ +G  AHS+GD+L+H ++DA+LGA  + DIG  FP  D K+K   S + +K   + +    Y I N+D T+I + PK+  Y   +R+N++
Sbjct:    2 RIGYGFDIHAFGSIKPLIIGGVQIPYNKGLIAHSNGDLLIHSLIDALLGATAMGDIGTFFPSEDKKYKNINSRILLKYIWKRIYLKNYRISNIDITIITETPKILSYIFLMRSNIA 117          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCMM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ispF PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.322e-22
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV  H + DA+L A GL DIG +F   DP+W+G   +  ++  V L+ + GY +GN    ++  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGVDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAAHALCDAVLSAAGLGDIGDVFGVGDPRWEGVSGATMLRHVVELITQHGYRVGNASVQVVGNRPKIGWRRYEAQAVLSRLLNA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.078e-22
Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  243 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            F+VG G+D+H+ +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D  WK   S  F+ EA +   E GY I N D T+I ++PK+ P+   ++  ++ L+  DP   N+KA T
Sbjct:   10 FKVGIGYDVHKFDNTCYNDANTFITICGIKINYHKKIIAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNTWKNIKSDYFLIEAQKKAQEKGYSISNADITIICEQPKIMPHALEMQEYIANLICIDPSCINVKATT 148          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia canis (strain Jake) GN=ispF PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.078e-22
Identity = 56/139 (40.29%), Postives = 80/139 (57.55%), Query Frame = 3
Query:  243 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            F+VG G+D+H+ +          + I GI + H +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A S  F+ EA     E GY I N D  +I ++PK+ P+   ++  ++ L+  D    N+KA T
Sbjct:   10 FKVGIGYDVHKFDNIEYDATNTFITICGIKINHHKKIVAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNKWKDAKSDYFLIEAKNKAQEKGYYISNADIIIICEQPKIMPHALKMQEYIANLIKIDTSCINVKATT 148          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis GN=ispF PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_LEPBP2.389e-2240.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPBA2.389e-2240.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCAP3.120e-2240.522-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCMM5.322e-2240.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRCR9.078e-2239.572-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRCJ9.078e-2240.292-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCTU2.641e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCTA2.641e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCBT2.641e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCBP2.641e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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