BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis GN=ispF PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_RHOSR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.450e-21
Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +E G P  + G+    E GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL++E  +++ N    +I  RPK+ P +   +  LS++LGA
Sbjct:    2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEEDDFDVANAAVQVIGNRPKIGPRRNEAQKVLSDILGA 122          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_HYDS0 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.505e-21
Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +R+G G D H  E G  L +GG       G + HSDGD LLH + DAILGAL   DIG +FPD   + K   S  F+ +A+ +M +  Y I NLD  +I  +P +S  ++ I  +LS LL       ++KAKT
Sbjct:    2 YRIGIGQDAHYFEKGKKLYLGGEEFDIGYGLKGHSDGDALLHAITDAILGALAKTDIGTLFPDKSKENKNRNSVDFLNKALEIMYDMDYSIVNLDCNIIADKPNISSVRDKIIESLSRLLSIPKDNISIKAKT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_THEFY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermobifida fusca (strain YX) GN=ispF PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 50/120 (41.67%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  249 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            VG G D+H  + G PL + G+  P E G   HSDGDV  H   DA+  A  L D+G  F  SDP+W+GA     + EA + +  AGYEIGN+   +I  RPK +P +      LS  +GA
Sbjct:    2 VGVGTDVHPFQTGRPLFLAGLEWPDEVGLSGHSDGDVAAHAACDALFSACALGDLGSQFGTSDPRWRGASGVALLTEAAQRVRAAGYEIGNIAIQIIGNRPKFAPRRHEAEKVLSAAVGA 121          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PSYCK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Psychrobacter cryohalolentis (strain K5) GN=ispF PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.685e-21
Identity = 52/136 (38.24%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  246 RVGHGFDLHRL----EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            ++G G D+H      +    +++ G+ + H     AHSDGDV+LH + DA+LGAL L DIGQ FPD+D    G  S V ++     +  AGY +GN D T++ +RPKL+P+   +R N++  L  D    ++KA T
Sbjct:    5 KIGQGIDVHAFHNNGQQQQYVVLAGVPIDHTHSLLAHSDGDVVLHALADALLGALALGDIGQHFPDTDAANAGLDSRVLLRYVYGKVLAAGYILGNADITVMCERPKLAPHNLAMRANIASDLQTDVSNISVKATT 140          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_THEMA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga maritima GN=ispF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  240 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 602
            P  +G G+D H L  G  L++ G+ +    G   HSDGDVL H ++DA+LGA  L DIG  FP++  ++K A S   +KE V++++E G+ + N+DAT++    KLSPY+E I  NL   L
Sbjct:    5 PMFIGFGYDRHPLVEGRRLVLAGVEIDAPLGSLGHSDGDVLSHAIIDALLGAGCLGDIGTWFPET-KEYKDANSLDLLKETVKILEERGFSVVNVDATVVASIVKLSPYREKIVENLKSAL 124          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_NOCFA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardia farcinica GN=ispF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +EPG P  + G+    E GC  HSDGDV  H + DA+L A GL D+G +F    P+W     +  + E  RL+ EAG+E+ N    +I  RPK+ P +   +  L +LL A
Sbjct:    2 RVGIGSDVHPIEPGRPCWMAGLLFEGEDGCSGHSDGDVAAHALCDALLSAAGLGDVGAVFGTGRPEWADVSGAAMLTEVRRLLGEAGFEVVNAAVQVIGNRPKIGPRRAEAQRVLGDLLDA 122          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae GN=ispF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG GFD+H  EPG P  + G+  P   GC  HSDGDV +H + DA+L A G  DIG +F   DP+W+    +  ++  V L+   GYE+ N    +I  RPK+ P +   +  LS LL A
Sbjct:    6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae (strain Br4923) GN=ispF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG GFD+H  EPG P  + G+  P   GC  HSDGDV +H + DA+L A G  DIG +F   DP+W+    +  ++  V L+   GYE+ N    +I  RPK+ P +   +  LS LL A
Sbjct:    6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_NOCSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=ispF PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.712e-20
Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHE-RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+HRL  G PL + G++ P E +G E HSD DV  H   DA+  A GL D+G  F  +DP W GA  +  ++E  R +  AG+EIGN+   +I  RP+L   +    T LS  +GA
Sbjct:    6 RVGIGTDVHRLVDGVPLHLAGLHWPDEPQGLEGHSDADVAAHAACDALFSAAGLGDLGSNFGTADPAWAGASGAALLEETARRVRAAGFEIGNVAVQVIGNRPRLGGRRAEAETALSAAVGA 127          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_MYCBO2.641e-2141.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RHOSR3.450e-2138.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HYDS04.505e-2140.602-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THEFY5.884e-2141.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSYCK7.685e-2138.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THEMA1.004e-2042.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_NOCFA1.004e-2040.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCLE1.004e-2041.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCLB1.004e-2041.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_NOCSJ1.712e-2042.622-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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