BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_THENN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.236e-20
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  249 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 602
            +G G+D H L  G  L++ G+ +    G   HSDGDVL H ++DA+LGA  L DIG  FP++  ++K A S   +KE V++++E G+ + N+DAT++    KLSPY+E I  NL   L
Sbjct:    8 IGFGYDRHPLVEGRRLVLAGVEIDAPLGSLGHSDGDVLSHAIIDALLGAGCLGDIGTWFPET-KEYKDANSLDLLKETVKILEERGFSVVNVDATVVASIVKLSPYREKILENLKSAL 124          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_RHOOB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus opacus (strain B4) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.236e-20
Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +E G P  + G+    E GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL+++  + + N    +I  RPK+ P +   +  LS++LGA
Sbjct:    2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEQDDFGVANAAVQVIGNRPKIGPRRNEAQKVLSDILGA 122          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PLAFX (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate HB3) GN=ISPF PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.920e-20
Identity = 56/152 (36.84%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  246 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R+G G+D+H+   L+  Y                 L +GG+ + +     +HSDGD++ H +VD+ILGALG  DIG +FPD D K K   S++F++ A  L+ +  Y+IGN+D  +I Q PK+S  ++ I  N+S +L  D    ++K KTH
Sbjct:   65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNIDESQISVKGKTH 215          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PLAF7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate 3D7) GN=ISPF PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.920e-20
Identity = 56/152 (36.84%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  246 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R+G G+D+H+   L+  Y                 L +GG+ + +     +HSDGD++ H +VD+ILGALG  DIG +FPD D K K   S++F++ A  L+ +  Y+IGN+D  +I Q PK+S  ++ I  N+S +L  D    ++K KTH
Sbjct:   65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNIDESQISVKGKTH 215          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_ACIC1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.814e-20
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H   P  PL + G++ P E G   HSD DV++H + +A+L A GL D+G  F  ++P+W+ A  +  + E VRL+ +AGY +GN    L+ +RPKL   +      L+E +GA
Sbjct:    8 RVGIGVDVHPFSPDRPLWLAGLHWPGEPGLAGHSDADVVIHALCNALLSAAGLGDLGTQFGTAEPEWRDAAGTRLLTETVRLVRDAGYAVGNAAVQLLGERPKLRERRTEAEQLLTETVGA 128          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_RHOE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +E G P  + G+      GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL++E  + +GN    +I  RPK+ P +   +  LS++LGA
Sbjct:    2 RVGLGTDVHPIEVGRPCWMAGLLFEEADGCSGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWDGVSGARMLAEVRRLLEENQFTVGNAAVQVIGNRPKIGPRRGEAQKVLSDILGA 122          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PSYA2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  246 RVGHGFDLHRL----EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            ++G G D+H      +    +++ G+ + H     AHSDGDV+LH + DA+LGAL L DIGQ FPD+D    G  S V ++     +  AGY +GN D T++ +RPKL+ +   +R N++  L  D    ++KA T
Sbjct:    5 KIGQGIDVHAFHNNGQQQQYVVLAGVPIEHTHSLLAHSDGDVVLHALADALLGALALGDIGQHFPDTDAANAGLDSRVLLRYVYGKVLAAGYMLGNADITVMCERPKLAVHNLAMRANIASDLQTDVSNISVKATT 140          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium paratuberculosis GN=ispF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P +   +  LSELLGA
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H +E G P  + G+    E GCE HSDGDV  H + DA+L A GL D+G +F    P+W G   +  +     L+ + G++IGN    +I  RPK+ P +   +  LS L+GA
Sbjct:    6 RVGIGTDVHPIEEGKPCWLLGLLFSDENGCEGHSDGDVAAHALCDALLSAAGLGDVGAVFGTGRPEWTGVSGAKMLSHVRDLLHDNGFQIGNAAVQVIGNRPKVGPRRAEAQELLSGLIGA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium avium (strain 104) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P +   +  LSELLGA
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGA 126          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_THENN2.236e-2042.372-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RHOOB2.236e-2038.022-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PLAFX2.920e-2036.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PLAF72.920e-2036.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACIC13.814e-2039.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RHOE46.506e-2038.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSYA26.506e-2037.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCPA6.506e-2038.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCA96.506e-2039.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCA16.506e-2038.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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