BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_DESAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.673e-32
Identity = 63/132 (47.73%), Postives = 93/132 (70.45%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            RVG+G+D+HRL  G PL++GG+ +P ++G + HSD DVLLH V DA+LGA GL DIG  FPD DPK+K   S+  ++E  R + + GY+I NLDATL+ + PK+ PY++ + + +++ LG +    N+KA T
Sbjct:    2 RVGYGYDVHRLVDGRPLVLGGVTIPFDKGLKGHSDADVLLHAVCDALLGAAGLGDIGMHFPDKDPKYKNIASTRLLEETGRKIAQEGYKIVNLDATLVAEAPKIGPYRQEMVSVIAKCLGLENRQVNVKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CALS8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.673e-32
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            F+VG GFD+HR      LI+GG+ +P E+G   HSD DVL+H ++DAILGA+G  DIG++FPD+D K+K   S V +KE  +L+   G  I N+D T++ Q+PK+SPY + ++TN+++ L  +    N+K KT
Sbjct:    2 FKVGFGFDVHRFSEDRKLILGGVEIPFEKGLLGHSDADVLIHAIIDAILGAMGENDIGRLFPDTDMKYKDISSIVLLKEVSKLLKNKGMSIINIDTTIVAQKPKISPYTDEMKTNIAKALNIEKTQVNIKGKT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_AZOSB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azoarcus sp. (strain BH72) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.673e-32
Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = 3
Query:  240 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            PFRVG GFD+H L PG  LI+GG+++P   G   HSD DVLLH + DA+LGA GL DIG++FPD+DP   GA S V ++EA   +  AG+E  N+DATLI + P++ P+   +  N++  LG D    N+K KT
Sbjct:    4 PFRVGQGFDVHALVPGRALIVGGVDIPFSAGLLGHSDADVLLHALTDALLGAAGLGDIGRLFPDTDPAHAGADSRVLLREAYARVKAAGWEAVNVDATLICRAPRILPHAPAMVVNIAADLGMDAAAINIKGKT 137          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_XYLFA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Xylella fastidiosa GN=ispF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            L  R+G G+D+H   PG  +++GG+ VPH  G  AHSDGDV+LH + DA+LGALGL DIGQ FP SD +WKGA S VF++    L+ E  + +GN+DAT I + PK++PY   +R  ++ LL   P   ++KA T
Sbjct:   13 LNVRIGQGYDVHAFGPGDHVMLGGVRVPHRCGVLAHSDGDVILHALCDAMLGALGLGDIGQHFPPSDVRWKGADSGVFVRHCHLLLRERDWCVGNVDATAICESPKIAPYVNAMREGIARLLEVQPECVSVKATT 147          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_SERP5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Serratia proteamaculans (strain 568) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHGFD+H+     PL+IGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S V ++EA + +   GY +GNLD T+I Q PK++P+   +R  L+E L       N+KA T
Sbjct:    2 RIGHGFDVHKFGGEGPLVIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRVLLREAWKRIRAKGYRLGNLDITIIAQAPKMAPHIPQMRVFLAEDLQCHMDDVNVKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_FUSNN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=ispF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 63/132 (47.73%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G+G+D+H+L  G  L++GG+ VPH +G   HSDGDVLLH + DAI+GALGL DIG  FPD+D   K   S++ +K+   +M E  Y+I NLD+ +++Q+PKL PY ++IR N++++L  +    N+KAKT
Sbjct:    3 RIGNGYDVHKLVEGRKLMLGGVEVPHTKGVLGHSDGDVLLHAITDAIIGALGLGDIGLHFPDNDENLKDIDSAILLKKINNIMKEKNYKIVNLDSIIVMQKPKLRPYIDSIRDNIAKILEINSELINVKAKT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BURVG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 65/136 (47.79%), Postives = 93/136 (68.38%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+D  +KGA S V ++E    +  AG+ I N+D+T+I Q PKL+P+ + +R N++  LG      N+KAKT+
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDAAFKGADSRVLLRECAARVKAAGFTIQNVDSTVIAQAPKLAPHIDGMRANIAADLGLPLERVNVKAKTN 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BURCM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 65/136 (47.79%), Postives = 93/136 (68.38%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+D  +KGA S V ++E    +  AG+ I N+D+T+I Q PKL+P+ + +R N++  LG      N+KAKT+
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDAAFKGADSRVLLRECAARVKAAGFTIQNVDSTVIAQAPKLAPHIDGMRANIAADLGLPLDRVNVKAKTN 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BURA4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.409e-32
Identity = 65/136 (47.79%), Postives = 93/136 (68.38%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+D  +KGA S V ++E    +  AG+ I N+D+T+I Q PKL+P+ + +R N++  LG      N+KAKT+
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDAAFKGADSRVLLRECAARVKAAGFTIQNVDSTVIAQAPKLAPHIDGMRANIAADLGLPLERVNVKAKTN 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_YERPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.676e-32
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = 3
Query:  246 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I Q PK++P+   +R NL+E L       N+KA T
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRCILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAEDLQCHMDDINVKATT 135          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_DESAA5.673e-3247.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CALS85.673e-3245.862-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOSB5.673e-3249.252-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_XYLFA7.409e-3248.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SERP57.409e-3249.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FUSNN7.409e-3247.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURVG7.409e-3247.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURCM7.409e-3247.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURA47.409e-3247.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_YERPB9.676e-3251.492-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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