BQ623115

Overview
NameBQ623115
Unique NameBQ623115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:47..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 3
Query:  174 ITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 551
            I  +AAVA+ PN+ L I ++ V  P+ GEV I+   T +CHTDA+T SG DPEG+FP +LGHE AG+V +VGEGV  V+PGDHVIP Y AEC EC+FC+SGKTNLC  VR   G G +M D  +RF
Sbjct:   10 IKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDAFTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVLSVKPGDHVIPLYTAECGECEFCRSGKTNLCVSVRDTQGKG-LMPDCTTRF 134          
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.029e-35
Identity = 72/132 (54.55%), Postives = 93/132 (70.45%), Query Frame = 3
Query:  159 TEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSG-KDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 551
            T+G+VITCKAAV W P   LVI+++ V PPQ  EVR+KIL++++CHTD   W+G  + E  FP ILGHEA GIVESVGEGV +V+ GD+VIP +  EC ECK CK  ++NLC +        VM+ND  +RF
Sbjct:    4 TQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAERAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDPMKRVMVNDGGTRF 135          
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.503e-34
Identity = 75/134 (55.97%), Postives = 99/134 (73.88%), Query Frame = 3
Query:  156 STEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG-ATGAGVMMNDRKSRF 551
            +T G+VI CKAAVAWE NK LVIE+++V  P A E+RIKI+ T +CHTD Y  + GK  +G FP +LGHE AGIVESVG GVTE QPG+ VIP + ++C EC+FC+S KTN C  V+G A  +  +M+ +++RF
Sbjct:    1 ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG-FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQC--VKGWANESPDVMSPKETRF 131          
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.564e-34
Identity = 72/136 (52.94%), Postives = 92/136 (67.65%), Query Frame = 3
Query:  153 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGV---MMNDRKSRF 551
            MST+G+VI CKAA+AWE  K L IE+V+VAPP+A EVR++I+  ++C +D Y  +    EGL P ILGHE AGIVESVG GV   +PGD VIP Y   CR+CKFC+S  TN C K        +   +M+D+ SRF
Sbjct:    1 MSTKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQIIAASVCRSDTYVINPAFKEGLLPVILGHECAGIVESVGPGVNNFKPGDKVIPLYVPHCRKCKFCQSPLTNFCTKFSEHKNPIIEQELMDDKTSRF 136          
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.564e-34
Identity = 68/135 (50.37%), Postives = 94/135 (69.63%), Query Frame = 3
Query:  156 STEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC---GKVRGATGAGVMMNDRKSRF 551
            +TEG+VI CKAA+AWE  K L +E+++V+PP+  EVR+KI+ T +C TD +  +    EG+FP ILGHE AGIVES+G+GV++ +PGD VIP Y  +C  CKFC + KTNLC    K++       +M+D  SRF
Sbjct:    1 TTEGKVIKCKAAIAWEAGKPLSVEEIEVSPPKDHEVRVKIVATGVCRTDEHAINPSFKEGVFPVILGHEGAGIVESIGQGVSKFKPGDKVIPLYMPQCGHCKFCLNPKTNLCEKISKIKTPISDQEVMSDGTSRF 135          
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.349e-34
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  183 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 551
            +AAVA E  K L I +V +  P+AGEV ++I  T +CHTD +T SG DPEG+FP ILGHE AG+V  VG GVT V+PGDHVIP Y  ECR+C  C S KTNLC  +RG  G G +M D  SRF
Sbjct:    4 RAAVAVEAGKPLEIMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGMFPAILGHEGAGVVVEVGPGVTSVKPGDHVIPLYTPECRQCPSCLSQKTNLCTAIRGTQGQG-LMPDGTSRF 125          
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.349e-34
Identity = 72/136 (52.94%), Postives = 95/136 (69.85%), Query Frame = 3
Query:  153 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRG---ATGAGVMMNDRKSRF 551
            M T+G+VITCKAA+AW+ +  L IE+++V+PP+A EVRIK++ T +C TD    + K  + LFP +LGHE AGIVESVG GVT  +PGD VIP +  +C++CK C S  TNLCGK+R     T    +M DR SRF
Sbjct:    1 MGTQGKVITCKAAIAWKTDSPLCIEEIEVSPPKAHEVRIKVIATCVCPTDINATNPKK-KALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKKCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRF 135          
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.712e-34
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 3
Query:  183 KAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 551
            +AAVA E  K L + +V +  P+AGEV ++I  T +CHTD +T SG DPEGLFP ILGHE AG+V  VG GVT V+PG+HVIP Y  ECR+C  C SGKTNLC  +R   G G +M D  SRF
Sbjct:    4 RAAVALEAGKPLEVMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGLFPSILGHEGAGVVVEVGPGVTSVKPGNHVIPLYTPECRQCASCLSGKTNLCTAIRATQGQG-LMPDGTSRF 125          
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.703e-33
Identity = 75/133 (56.39%), Postives = 91/133 (68.42%), Query Frame = 3
Query:  153 MSTEGQVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 551
            MST G+VI CKAAV WEP K   IE+V+VAPP+A EVRIKIL T +C +D +  +G      FP ILGHEAAG+VESVGEGVT V+PGD VIP +  +C EC  C S K NLC K    + +G +M D  +RF
Sbjct:    1 MSTAGKVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRIKILATGICRSDDHVITGALVRP-FPIILGHEAAGVVESVGEGVTSVKPGDKVIPLFVPQCGECSACLSTKGNLCSKNDIGSASG-LMPDGTTRF 131          
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 8.249e-33
Identity = 67/128 (52.34%), Postives = 91/128 (71.09%), Query Frame = 3
Query:  168 QVITCKAAVAWEPNKALVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRF 551
            QVITC AAVAW   + LV+E+V+V+PPQ  E+RIK++ T+LC +D   W   + + L P I GHEAAGIVES+GEGVTE + GDHV+  +  EC  C+ C SGK+N+C +V G    G+M +D+K+RF
Sbjct:   12 QVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAW---ESQSLLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMC-QVLGMERKGLMHSDQKTRF 135          
The following BLAST results are available for this feature:
BLAST of BQ623115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
FRMA_HAEIN2.098e-3657.94S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADHL3_ARATH3.029e-3554.55Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]
ADH1_GADCA1.503e-3455.97Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
ADHQ_RABIT2.564e-3452.94Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADH4_STRCA2.564e-3450.37Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADHI_RHOS43.349e-3457.72Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
ADH4_RAT3.349e-3452.94Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
FADH_PARDE5.712e-3456.91S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADH1_APTAU3.703e-3356.39Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
ADHL6_ARATH8.249e-3352.34Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00206 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00206 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623115 ID=BQ623115; Name=BQ623115; organism=Citrus sinensis; type=EST; length=551bp
AATAGAGGGAGCTACTTTAGAAAAATCTCACCTCTGTTGCCGGCAGCCAC
TCTCAGATCGTGTCACGTCCCTTTTGAATAATAATATCTATCTGCATCTA
CTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTCAGCAG
CCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGGCCTGG
GAACCCAACAAGGCATTGGTGATTGAGGATGTGCAGGTTGCTCCGCCTCA
GGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTG
ATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCCTGTATC
CTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGTGTGAC
CGAGGTTCAACCAGGTGATCATGTCATCCCTTGTTACCAGGCAGAATGCC
GAGAGTGCAAGTTTTGCAAGTCTGGAAAGACTAACCTCTGTGGTAAGGTT
AGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTTT
C
back to top