BQ623127

Overview
NameBQ623127
Unique NameBQ623127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9730 contig Csv1_Contig9730:394..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.622e-13
Identity = 48/153 (31.37%), Postives = 71/153 (46.41%), Query Frame = 1
Query:   64 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGA-LAAAAYHQYIL 516
            ++  R+  Y+ AQ L +     L    +++    +    +T+ SG      L  EII TF L++ V++   DP+ S     VP   PL  G  V    +A    +G  +NPARSFG A+       W  HWI+W+GP +G  LA   Y    L
Sbjct:   98 ITAFRSALYVAAQLLAS----SLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRSS-----VPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATG---VWTHHWIYWLGPLIGGPLAGLVYESLFL 238          

HSP 2 Score: 25.7942 bits (55), Expect = 3.622e-13
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 3
Query:    6 ISGGHINPAVT 38
            +SGGH+NPAVT
Sbjct:   79 VSGGHLNPAVT 89          
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 52/153 (33.99%), Postives = 77/153 (50.33%), Query Frame = 1
Query:   64 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV--ASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 513
            ++L R + Y VAQ LG+     L++        S GG A      +G +   AL  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    L      G  +NPA SFG A++      W   W++WVGP +G   A   ++ +
Sbjct:   98 ITLFRGLLYWVAQLLGSTVACFLLRF-------STGGQATGTFGLTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWEWGYQWVYWVGPLIGGGLAGVIYELL 236          
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.030e-12
Identity = 44/153 (28.76%), Postives = 73/153 (47.71%), Query Frame = 1
Query:   64 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFV-GALAAAAYHQYIL 516
            ++ +RA+ Y+ AQ L +     L    +++    +    + + +G      L  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARSFG A+       W +HW++W+GP + G+LA   Y    +
Sbjct:  104 ITKLRALLYVAAQLLAS----SLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATG---VWTNHWVYWIGPLLGGSLAGFVYESLFM 244          

HSP 2 Score: 27.7202 bits (60), Expect = 1.030e-12
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:    6 ISGGHINPAVTFG 44
            +SGGH+NPAVT G
Sbjct:   85 VSGGHLNPAVTVG 97          
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 2.934e-12
Identity = 46/148 (31.08%), Postives = 76/148 (51.35%), Query Frame = 1
Query:   82 VAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV---IYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 513
            V Y++AQ LGA  G  +          ++GG GA     G +   A+ AE++GTF+L+ T+      +R+ +       A + IG  V  +      I+G+ +NPAR+FG  +   I+     W+ + I+ +GP VGA+ AA  +QY+
Sbjct:  101 VPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243          

HSP 2 Score: 25.7942 bits (55), Expect = 2.934e-12
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 3
Query:    6 ISGGHINPAVTFG 44
            ISG HINPAVT G
Sbjct:   76 ISGCHINPAVTIG 88          
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.948e-12
Identity = 52/152 (34.21%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   82 VAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNND-----KAWDDHWIFWVGPFVGALAAAAYHQYILR 519
            V Y+VAQ +GA  G  L  A +     ++GG GA     G   G A+  E IGTF+L+  +      +R+      P  A L IG  V  +      ITG+ +NPAR+FG    Y  D       W    I+ +GP VGA+AAA  + Y+ +
Sbjct:  102 VPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYLAK 245          

HSP 2 Score: 24.6386 bits (52), Expect = 4.948e-12
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    6 ISGGHINPAVT 38
            ISG HINPAVT
Sbjct:   77 ISGAHINPAVT 87          
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.079e-11
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 1
Query:   70 LIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAA 495
            LI+  AY+VAQ LG+I   G ++      ++   G   TV +G N   A   E I TF L++ +       R+  +      A + IG  + +  +   P+TG  +NPARS G A ++     ++  WI+ + P VGA+A A
Sbjct:  112 LIQVPAYVVAQLLGSILASGTLRLLFMGNHDQFSG---TVPNGTNL-QAFVFEFIMTFFLMFVICGVATDNRAVGE-----FAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGE---YEGIWIYLLAPVVGAIAGA 241          

HSP 2 Score: 25.409 bits (54), Expect = 1.079e-11
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    6 ISGGHINPAVT 38
            ISGGH NPAVT
Sbjct:   91 ISGGHFNPAVT 101          
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 50/152 (32.89%), Postives = 73/152 (48.03%), Query Frame = 1
Query:   64 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT----VASGYNKGSALGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGA-LAAAAY 501
            ++L R+  Y+ AQ  G+     L++         L GGA T    +A G      + AE + TF L+  + +   DP+R+A     P+L  L +G       +A   +TG  +NPARSFG A+       W  HW++WVGP  G  LA  AY
Sbjct:  100 ITLFRSALYVAAQLAGSSLACLLLRC--------LTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANT----VAGGALTGASMNPARSFGPALATGE---WAHHWVYWVGPLAGGPLAVVAY 236          
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Match: NIP22_MAIZE (Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.814e-11
Identity = 52/168 (30.95%), Postives = 83/168 (49.40%), Query Frame = 1
Query:   73 IRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRNNPFKLRK 576
            I+   Y  AQ  GA+C   ++KA + H    +G    T  SG +   AL  EI+ TF +++   +     R+  +     LA L +G AV +  +   P++G  +NPAR+   AV  N    +   WI+++GP +G L+ A  + YI    A  A  + R + FKLR+
Sbjct:  127 IQVPFYWAAQFTGAMCAAFVLKAVL-HPIAVIG---TTTPSGPH-WHALLIEIVVTFNMMFVTCAVATDSRAVGE-----LAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASN---VFTGLWIYFLGPVIGTLSGAWVYTYIRFEEAPAAKDTQRLSSFKLRR 281          

HSP 2 Score: 23.483 bits (49), Expect = 1.814e-11
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:    6 ISGGHINPAVT 38
            ISG H+NPAVT
Sbjct:  105 ISGAHMNPAVT 115          
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Match: AQPM_METTH (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum GN=aqpM PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.996e-11
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 1
Query:   82 VAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV---IYNNDKAWDDHWIFWVGPFVGALAAAAYHQYI 513
            V Y++AQ LGA     +          ++GG GA     G     A+ AE +GTF+L+ T+      +R+ +       A + IG  V  +      ITG+ +NPAR+FG  +   ++     W+   I+ +GP VGA+ AA  +QY+
Sbjct:  101 VPYIIAQLLGAAFASFIFLQCAGITAATIGGLGATAPFPGIGYWQAMLAETVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTIGNITGSSLNPARTFGPYLNDMVFAGTNLWNYFPIYVIGPVVGAVLAALTYQYL 243          

HSP 2 Score: 25.7942 bits (55), Expect = 3.996e-11
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 3
Query:    6 ISGGHINPAVTFG 44
            ISG HINPAVT G
Sbjct:   76 ISGCHINPAVTIG 88          
The following BLAST results are available for this feature:
BLAST of BQ623127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
TIP41_ORYSJ3.622e-1331.37Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE4.090e-1333.99Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP42_MAIZE1.030e-1228.76Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
AQPM_METTM2.934e-1231.08Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
AQPM_ARCFU4.948e-1234.21Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
NO26_SOYBN1.079e-1130.99Nodulin-26 OS=Glycine max PE=1 SV=2[more]
TIP42_ORYSJ1.316e-1132.89Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
NIP22_MAIZE1.814e-1130.95Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1[more]
AQPM_METTH3.996e-1130.41Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00218 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00218 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623127 ID=BQ623127; Name=BQ623127; organism=Citrus sinensis; type=EST; length=610bp
CTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCCTGTT
CTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGGCTC
AGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATGAAG
CATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGGCTA
CAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGCTTG
TTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGACTCT
CACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGT
TCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTAGGA
GCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGACCAT
TGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGCAGCGGCATA
CCACCAGTACATCTTGAGGGCTGCTGCTATCAAGGCTTTGGGATCATTCC
GCAACAACCCCTTCAAACTAAGAAAGCAAATTATGATGAATATGAACCAC
CAACCAGAAT
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