BQ623129

Overview
NameBQ623129
Unique NameBQ623129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8578 contig Csv1_Contig8578:57..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.902e-29
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 3
Query:    3 AFVSSSSNAMVNDFCVA--DLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 488
            +F  ++  + + DFCVA  DLK      G  C  P    A+DF +SGL  AG T + + + VT   V Q P +N LG+SL R+D A  G  P HTHP A+EIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+
Sbjct:   18 SFAEANDPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGV 183          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.484e-29
Identity = 70/168 (41.67%), Postives = 100/168 (59.52%), Query Frame = 3
Query:   15 SSSNAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFAN 518
            SS +  + DFCV DLK S S  G+PC   + V+A DF +SGLG   +T++     V PA V  FP +N LG+S+  ++LA GGV P H HP A+E+  V+ G +  GF+S++ NT++ K L  G+  + P+GL+HFQ N G   A    +FNS  PG  +    LF +
Sbjct:   27 SSDSDPLQDFCVGDLKASASINGFPC--KSAVSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTN-NTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGS 191          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.484e-29
Identity = 70/175 (40.00%), Postives = 98/175 (56.00%), Query Frame = 3
Query:   33 VNDFCVADLKLSDS--PAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLV 539
            + DFCV   K +D     G  C  P  V  DDF+F GL +  NT + +  A T    A  P +N LG+S+ARLD A  G+ P HTHP A+E+ +V+ G    GF++S+     N ++ K L KGD+ +FPQGL+HFQ+N G    +G    +S NPG+     A+F     SQL+
Sbjct:   28 LQDFCVGVNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFGPEHLSQLM 202          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.484e-29
Identity = 67/161 (41.61%), Postives = 99/161 (61.49%), Query Frame = 3
Query:   33 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG-ADGALGFVSFNSPNPGLQITDFALF 512
            + D CVAD        G+ C P + +TA DF F+G+G      + + +AVT A V +   +N LG+SLAR+D A GG+ P HTHP A+E++ V+ G +  GFI ++AN ++ KT+KKG++ +FP+GL+H+Q N+  A  A    +FNS  PG Q     LF
Sbjct:   27 LQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFI-TTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLF 186          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.484e-29
Identity = 73/177 (41.24%), Postives = 102/177 (57.63%), Query Frame = 3
Query:    3 AFVSSSSNAMVNDFCVA--DLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 521
            +FV++   + + DFCVA  DLK      G  C  P  V A DF FSGL + GNT + + + VT   V Q P +N +G+SL R+D A  G  P HTHP  SEIL++V G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+      +F +N
Sbjct:   18 SFVNAYDPSPLQDFCVAIDDLK-GVFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSN 193          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.533e-29
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   33 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 515
            + D CVAD        G+PC     +T  DF F+G+       S + +AVT A V + P +N L +SLAR+D A GG+ P HTHP A+E++ V+ G +  GFI ++AN ++ KT+K G++ +FP+GL+HFQ N+G   A    +FNS  PG       LFA
Sbjct:   28 LQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFI-TTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFA 187          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.533e-29
Identity = 68/166 (40.96%), Postives = 97/166 (58.43%), Query Frame = 3
Query:    3 AFVSSSSNAMVNDFCVA--DLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA--NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGL 488
            +F  +   + + DFCVA  DLK      G  C  P    A+DF FSGL  AG+T + + + VT   V Q P +N +G+SL R+D A  G  P HTHP A+EIL+++ G +  GF+SS+   N ++ K L  GD+ +FP G++HFQVN G   A+ F   +S N G+
Sbjct:   18 SFAEAYDPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGV 183          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.438e-29
Identity = 74/175 (42.29%), Postives = 103/175 (58.86%), Query Frame = 3
Query:    9 VSSSSNAMVNDFCVADLK-LSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 521
            V +S    + DFCVADL   + S  G+PC P +    DDF+FS  L  AGNT++   +AVT   VA++P  N LG+S+ R+D A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   VSFNS NPG+      LF +N
Sbjct:   21 VLASDPDPLQDFCVADLDGKAVSVNGHPCKPMSEA-GDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSN 194          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.233e-28
Identity = 77/178 (43.26%), Postives = 102/178 (57.30%), Query Frame = 3
Query:   33 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLG--VAGNTTSIINAAVTPAFVAQ---FPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANT-VYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQT 548
            + DFCVAD        G PC  PA VTADDF FSG+G   AG       A+    F A+    P +N LG S AR+D+A GGV P H HP ASE  +V+ G +  GF++S  ++ V  K L++GD+   PQGL+HF  N+G++ A  + S +S NPGL +   AL A  L   LV +T
Sbjct:   34 LQDFCVADPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGRGA-TASRRYGFTARSVDIPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAAPLPVDLVAKT 210          
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.233e-28
Identity = 68/169 (40.24%), Postives = 95/169 (56.21%), Query Frame = 3
Query:    6 FVSSSSNAMVNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 512
            FV+ +S  M+ D CVADL  +    GY C     +T +DF F GL     T +   + VT A V + P +N LGLS++R+D A  G+ P H HP ASEI+ V+ G +  GF+ ++A  +  K L KGD+  FP+GL+HFQ N     A    +F+S  PG Q    +LF
Sbjct:   16 FVAMASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFV-TTAGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLF 183          
The following BLAST results are available for this feature:
BLAST of BQ623129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL114_ARATH1.902e-2941.57Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GLT1_ARATH2.484e-2941.67Germin-like protein subfamily T member 1 OS=Arabid... [more]
GLP1_MESCR2.484e-2940.00Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL24_ARATH2.484e-2941.61Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL118_ARATH2.484e-2941.24Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL22_ARATH5.533e-2940.99Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL113_ARATH5.533e-2940.96Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
OXO2_HORVU9.438e-2942.29Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GL51_ORYSJ1.233e-2843.26Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL25_ARATH1.233e-2840.24Probable germin-like protein subfamily 2 member 5 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00220 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00220 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623129 ID=BQ623129; Name=BQ623129; organism=Citrus sinensis; type=EST; length=553bp
TTGCTTTCGTATCCTCTTCCTCCAATGCTATGGTTAACGACTTCTGCGTC
GCTGACCTAAAGCTGTCGGATAGTCCCGCCGGCTATCCTTGCGTGCCCCC
CGCTATGGTTACCGCTGACGACTTCGTATTTTCGGGCCTCGGCGTGGCCG
GAAACACCACGAGCATTATCAACGCGGCAGTGACACCTGCATTTGTAGCT
CAATTTCCGGCCGTGAATGGGCTCGGACTCTCCTTGGCACGCCTAGATCT
TGCAAAGGGTGGCGTAATCCCAATCCACACTCATCCAGCTGCTTCCGAAA
TCCTTCTTGTTGTGCATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCA
GCTAACACTGTTTACGTAAAGACGCTTAAGAAGGGAGATATCATGATCTT
TCCACAAGGGTTGTTGCATTTTCAAGTAAATTCCGGTGCGGACGGAGCCC
TCGGTTTTGTTAGCTTCAACAGCCCGAATCCTGGACTCCAAATCACCGAT
TTCGCCTTATTTGCTAACAACTTGTCTTCCCAATTGGTGGAGCAGACCAC
TTT
back to top