BQ623138

Overview
NameBQ623138
Unique NameBQ623138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:806..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.874e-26
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++K+F RW+ +DV V D  L +YI +       YVPHTAGRY+ ++F KA+  IVERL N +M    N GKKL A++IV++A EII   T QNPIQV+VDA+ N+GPRED T
Sbjct:    5 EIKVFGRWSTKDVVVKDPGLRNYINLTPI----YVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPREDTT 112          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.952e-26
Identity = 54/112 (48.21%), Postives = 79/112 (70.54%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++KLFN+W+++ ++V D SL  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN GKK +A  IVK + E+I+L T +NP+QV+V A+ N+ PRE+ T
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPREETT 120          

HSP 2 Score: 25.7942 bits (55), Expect = 8.952e-26
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            +PLRR++ A+  LT GAR  AF
Sbjct:  136 APLRRIDLALRHLTEGARLKAF 157          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.346e-25
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            D+K+F +W  + V++ D SL  YIG+       Y+PHT GR+  +RF KA+ PIVERL N++M  GRN GKK++A  IVK A +II L T QNPIQV+V A+ NS PRE+ T
Sbjct:   10 DLKVFGKWDTK-VEIRDPSLKKYIGLMPV----YLPHTGGRHEHRRFGKAKLPIVERLINNVMRPGRNKGKKMLAYNIVKTAFDIIALKTGQNPIQVLVKAIENSAPREEVT 116          

HSP 2 Score: 23.483 bits (49), Expect = 3.346e-25
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  517 SPLRRVNQAIYLLTTGARESAFS 585
            +P RRV+ A+  L  GA+E++F+
Sbjct:  132 APQRRVDLALRHLVMGAKEASFN 154          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 9.601e-25
Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            D+K+F +W  + V++ D SL  YI +       Y+PHT GR+  +RF KA+ PIVERL N +M  GRN GKK +A  IVK A +II+L T QNPIQV+V A+ NS PRE+ T
Sbjct:    9 DIKVFGKWDTK-VEIRDPSLKKYISLMPV----YLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVT 115          

HSP 2 Score: 24.6386 bits (52), Expect = 9.601e-25
Identity = 9/23 (39.13%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  517 SPLRRVNQAIYLLTTGARESAFS 585
            SP RR++ A+  + TGA++++F+
Sbjct:  131 SPQRRIDLALRHIATGAKDASFN 153          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 2
Query:  137 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            V LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +II+  T QNPIQV+VDA+IN  PRE+ T
Sbjct:   40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPREEVT 146          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.097e-23
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 2
Query:  131 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            Y++K+F +W   +V+V D  L DYI ++      Y+PHT GR++ KRF KA+ PIVERL N +M   +N GKK +A  IVK A +IIH  T +NPIQV+V A+ N+ PRE+ T
Sbjct:   11 YEMKVFGKWDPTEVEVRDPGLKDYICLKPM----YLPHTGGRHAKKRFAKAEVPIVERLINRVMRTEKNTGKKHLAYNIVKRAFDIIHERTGENPIQVLVQALENAAPREETT 119          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.741e-23
Identity = 55/112 (49.11%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            +VK+F +W  + V+V D SL  YI + +     Y+PHT GR+  +RF K++ PIVERL N+LM  GRN GKK++A  IVK   +II + T QNPIQV+V A+ N+ PRE+ T
Sbjct:   11 NVKVFGKWDTK-VEVRDPSLKKYIDLMSI----YLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPREEVT 117          

HSP 2 Score: 24.6386 bits (52), Expect = 1.741e-23
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  517 SPLRRVNQAIYLLTTGARESAFS 585
            +P RRV+ A+  L TGA E++F+
Sbjct:  133 APQRRVDLALRHLVTGASEASFN 155          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.942e-23
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 463
            ++ LF ++++E+V+VN++SL  YI +        VPH A   +     KA+ PI ER   SLM HGRN+GKK +A+ I + A  IIH +T +NP+QV+VDA++NSGPRED
Sbjct:   22 EINLFEKYSYEEVKVNNVSLRPYINLS---RRGIVPHAATTITKGTTGKARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPRED 128          

HSP 2 Score: 25.0238 bits (53), Expect = 2.942e-23
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  471 RIGSAGVVRRQAVDIFPI 524
            RIG AG +RR +VD+ P+
Sbjct:  131 RIGRAGSMRRTSVDVSPL 148          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.290e-23
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 2
Query:  143 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +I++  T QNPIQV +DA++N+ PRE+ T
Sbjct:   42 LFGKWSFENVVVRDPGLRRYICLKPV----VLPHTEGRYQNYRFGKARIPIVERLINLMMRPGRNAGKKHKAYNIVKRAFDIVYYKTGQNPIQVFIDAIVNTAPREEIT 146          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.290e-23
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:  137 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            + LF +W++EDV V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A ++I+  T +NP+QV +DA+IN+ PRE+ T
Sbjct:   39 ILLFGKWSYEDVVVRDPGLRRYICLKPV----ILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDLIYYKTGKNPLQVFIDAIINTAPREEIT 145          
The following BLAST results are available for this feature:
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_METJA6.874e-2652.6830S ribosomal protein S7P OS=Methanocaldococcus ja... [more]
RS7_DESK18.952e-2648.2130S ribosomal protein S7P OS=Desulfurococcus kamch... [more]
RS7_SULTO3.346e-2551.7930S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_SULSO9.601e-2550.8930S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_PYRIL8.402e-2453.1530S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_METKA1.097e-2348.6730S ribosomal protein S7P OS=Methanopyrus kandleri... [more]
RS7_SULAC1.741e-2349.1130S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]
RS5_ENCCU2.942e-2346.3640S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_THENV9.290e-2350.4630S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_PYRAE9.290e-2348.6530S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00229 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623138 ID=BQ623138; Name=BQ623138; organism=Citrus sinensis; type=EST; length=598bp
GGGAGAACTCAGCGAGCGGCAGCCGATTCTTATTATTTTATCTCTCTCGC
TCTCTCACTCTCTCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAGTG
GCACAATCTCAAGACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAA
TAGGTGGACTTTCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATT
ATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCT
GGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGA
GAGGCTTACGAACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAAT
TGATGGCTGTCAGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTG
ACCGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGG
TCCAAGGGAAGATGCTACCCCGTATTGGATCTGCTGGTGTTGTTAGGCGT
CAAGCTGTGGATATTTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATC
TACTCACCACTGGTGCTCGTGAATCTGCTTTTTCGTAACATAAAGACT
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