BQ623138

Overview
NameBQ623138
Unique NameBQ623138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:806..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.611e-22
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = 2
Query:  119 SQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM------------MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            S P   +KLF RW+++D+++ + +L + I ++      Y+PHT GR+  K+F K + PIVERL N LM            ++ +N GKKL A+R VK+A EII L T +NPIQV +DA+ NS  RE+ T
Sbjct:    5 SNPETQIKLFGRWSYDDLRIENAALKNVISLKPV----YLPHTGGRHEHKKFGKLEIPIVERLVNRLMGQAMNSGSRKDHVNSKNQGKKLKAMRTVKYAFEIIELRTGKNPIQVFLDAIENSIIREEVT 129          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.341e-21
Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = 2
Query:  101 AQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 463
            A+S+D  +   + KLF +W   ++   D S   Y+ V      T V HT GR++ K+F+K++  IVERL N LM  G N GKK  A++IV+ A +I+H  TD+NPIQV+V AV N+ PRE+
Sbjct:   16 AESEDTQEVAANAKLFGKWDVAEIHYEDPSTRRYLAV------TPVAHTMGRHAQKQFKKSEISIVERLANRLMKTGANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREE 130          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.752e-21
Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++KLF +W  E V V D SL  YI V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ T
Sbjct:    2 EIKLFGKWDSETVAVKDPSLKSYISVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETT 109          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.752e-21
Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++KLF +W  E V V D SL  YI V        VPHTAGR + K F KA+  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ T
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAIIENRTKENPVQVLVDALENSGPREETT 109          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.288e-21
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ T
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETT 109          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.288e-21
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ T
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVTPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETT 109          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_META3 (30S ribosomal protein S7P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps7p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.695e-21
Identity = 50/112 (44.64%), Postives = 75/112 (66.96%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++KLFN+W   ++ V D SL  YI ++      +VPHT+GR S + F KA+  IVERL N+LM   +N G+K + + IV+ A EII   T++NP++V+V+A+ N GPRE+ T
Sbjct:    2 EIKLFNKWDTTEIVVKDPSLRHYINLEPI----FVPHTSGRNSGRMFEKAKMNIVERLVNNLMRAEQNTGQKQVTLSIVEEAFEIIEKRTNENPVKVLVEALENGGPREETT 109          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.136e-20
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  137 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            + LF +W   DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN GKK  A +I+K A +II++ T +NP+QV VDAV+N  PRE+ T
Sbjct:   40 ILLFGKWNVNDVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYVATGKNPVQVFVDAVVNVAPREEIT 146          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.255e-20
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  143 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 463
            LFNRW   +V + D  ++ Y+ +    ++  VPH+ GR + + F KA   IVERL N LM    N GKK +A+RIV+ A EI+H  T +NPI+V+ DAV N+GPRE+
Sbjct:   12 LFNRWDTSEVTIRDPGIARYVNL----NSMMVPHSCGRLTRQEFHKANMLIVERLINQLMRTEVNTGKKQLAIRIVRDAFEIVHQKTKKNPIEVLCDAVANAGPREE 114          

HSP 2 Score: 21.9422 bits (45), Expect = 1.255e-20
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  517 SPLRRVNQAIYLLTTG 564
            +P+RRVN A+ L+  G
Sbjct:  132 APMRRVNTAVGLIAAG 147          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.483e-20
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   86 ATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 463
            A A  A+  +P       KLF  W   D++ +D S   YI V      T + HT GR++ K+F+K++  IVERL N LM    N GKK +A  IV  A E++H  TD+NPIQV+V AV NS PRE+
Sbjct:    9 ADADAAEESEPETAR--AKLFGEWDITDIEYSDPSTERYITV------TPIAHTMGRHADKQFKKSEISIVERLINRLMQTDENTGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPREE 126          
The following BLAST results are available for this feature:
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_KORCO4.611e-2242.6430S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]
RS7_HALSA1.341e-2143.8030S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_METMP1.752e-2150.0030S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM51.752e-2150.0030S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM72.288e-2149.1130S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM62.288e-2149.1130S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_META38.695e-2144.6430S ribosomal protein S7P OS=Methanococcus aeolicu... [more]
RS7_CALMQ1.136e-2044.1430S ribosomal protein S7P OS=Caldivirga maquilinge... [more]
RS7_METHJ1.255e-2045.7930S ribosomal protein S7P OS=Methanospirillum hung... [more]
RS7_HALMA1.483e-2043.6530S ribosomal protein S7P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00229 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623138 ID=BQ623138; Name=BQ623138; organism=Citrus sinensis; type=EST; length=598bp
GGGAGAACTCAGCGAGCGGCAGCCGATTCTTATTATTTTATCTCTCTCGC
TCTCTCACTCTCTCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAGTG
GCACAATCTCAAGACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAA
TAGGTGGACTTTCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATT
ATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCT
GGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGA
GAGGCTTACGAACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAAT
TGATGGCTGTCAGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTG
ACCGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGG
TCCAAGGGAAGATGCTACCCCGTATTGGATCTGCTGGTGTTGTTAGGCGT
CAAGCTGTGGATATTTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATC
TACTCACCACTGGTGCTCGTGAATCTGCTTTTTCGTAACATAAAGACT
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