BQ623138

Overview
NameBQ623138
Unique NameBQ623138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:806..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_METTP (30S ribosomal protein S7P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps7p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.388e-18
Identity = 43/109 (39.45%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  137 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 463
            +K+F +W   +V++ D+S+  YI ++       V HT GR++ ++F+K++  +VERL N +M   +N G+K +A RIV+ A +IIH  T +NP+ V+V A+ N+GPRE+
Sbjct:    1 MKVFGKWDASEVEIPDLSVKGYINLKPR----IVLHTGGRHAKQQFKKSELHVVERLINKMMRKEKNTGQKQIAYRIVEEAFDIIHSRTKENPLSVLVRAISNAGPREE 105          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_METBF (30S ribosomal protein S7P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps7p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.388e-18
Identity = 44/109 (40.37%), Postives = 71/109 (65.14%), Query Frame = 2
Query:  137 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 463
            +K+F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N GKK   +R V+ A +I+   T QNPIQV+VDA+ N+GPRE+
Sbjct:    1 MKIFGKWDPTEVEVRDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTEINTGKKQKTLRAVEEAFDIVSKKTKQNPIQVLVDAIANAGPREE 105          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.813e-18
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++K+F RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV++ A+ NS PRED T
Sbjct:   14 ELKVFGRWSVEDVTVNDPSLRPYIALEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTT 137          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.039e-18
Identity = 54/128 (42.19%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++K+  RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                GKK+ A  +VK A  II   T QNPIQV + A+ NS PRED T
Sbjct:   14 ELKVMGRWSVEDVVVNDPSLRPYINLEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASSHKVGGHFMRREHRSLMGKKMKAYEVVKEAFMIIERRTKQNPIQVFIRAIENSAPREDTT 137          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.039e-18
Identity = 55/128 (42.97%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            +VK+  RW+ EDV V D SL  YI + A      +PH+ GRY+ K F KA   IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T
Sbjct:   14 EVKVMGRWSVEDVTVEDPSLKPYINLDAR----ILPHSHGRYAKKPFGKANVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVKAIENSAPREDTT 137          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.039e-18
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 2
Query:  101 AQSQDPSQPH-----YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 463
            +++ +P QP         KLF RW    ++ +D S   YI V      T V HT GR++ K+F+K++  IVERL N LM    N GKK  A RIV++A ++I   T+++P+QV+V AV N+ PRE+
Sbjct:    4 SEAPEPDQPAGAEEATGAKLFERWDVTGIEYDDPSTERYITV------TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREE 123          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.067e-18
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  143 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMH---------GRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            LF +W   D++V D  L   I ++       +P+T GR ++KRF KA   IVERL N  MMH         GR  GKK+ ++  VK A EII+L T +NP++V+V AV NS P ED T
Sbjct:    9 LFRKWDLSDIEVVDPGLKTAISLRKMT----LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAPNEDTT 121          

HSP 2 Score: 26.5646 bits (57), Expect = 4.067e-18
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SPLRRV+ A+  +  G +E+AF
Sbjct:  137 SPLRRVDLALRFIADGVKEAAF 158          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.275e-18
Identity = 54/131 (41.22%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  125 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T
Sbjct:   12 PH-EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTT 137          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.275e-18
Identity = 54/131 (41.22%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  125 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T
Sbjct:   12 PH-EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTT 137          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.890e-18
Identity = 54/128 (42.19%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            ++K+  RW+ EDV VND SL  YI ++A      +PH+ GR++ K F KA   IVERL N +M  G  +                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T
Sbjct:   14 ELKVMGRWSVEDVTVNDPSLRPYINLEAR----LLPHSHGRHAKKAFGKANVHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTT 137          
The following BLAST results are available for this feature:
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_METTP1.388e-1839.4530S ribosomal protein S7P OS=Methanosaeta thermoph... [more]
RS7_METBF1.388e-1840.3730S ribosomal protein S7P OS=Methanosarcina barker... [more]
RS7_THEGJ1.813e-1842.1930S ribosomal protein S7P OS=Thermococcus gammatol... [more]
RS7_THEON4.039e-1842.1930S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_PYRKO4.039e-1842.9730S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_HALMO4.039e-1840.4830S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_CENSY4.067e-1843.2230S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]
RS7_PYRFU5.275e-1841.2230S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_PYRAB5.275e-1841.2230S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_THECE6.890e-1842.1930S ribosomal protein S7P OS=Thermococcus celer GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00229 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623138 ID=BQ623138; Name=BQ623138; organism=Citrus sinensis; type=EST; length=598bp
GGGAGAACTCAGCGAGCGGCAGCCGATTCTTATTATTTTATCTCTCTCGC
TCTCTCACTCTCTCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAGTG
GCACAATCTCAAGACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAA
TAGGTGGACTTTCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATT
ATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCT
GGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGA
GAGGCTTACGAACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAAT
TGATGGCTGTCAGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTG
ACCGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGG
TCCAAGGGAAGATGCTACCCCGTATTGGATCTGCTGGTGTTGTTAGGCGT
CAAGCTGTGGATATTTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATC
TACTCACCACTGGTGCTCGTGAATCTGCTTTTTCGTAACATAAAGACT
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