BQ623138

Overview
NameBQ623138
Unique NameBQ623138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:806..1399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.890e-18
Identity = 54/131 (41.22%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  125 PHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            PH ++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T
Sbjct:   15 PH-EIKVMGRWSTEDVEVKDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTT 140          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.466e-17
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  137 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGR-----------NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            +KLF RW +EDV V D  L DYI ++       +P++ GR+   RF KA+ PI+ERL   LM  G              GKK  A +I+    EII   T QNP++V V A+ N+ PRE+ T
Sbjct:    3 MKLFGRWDYEDVTVEDPGLRDYINLKPM----LIPYSGGRHQKHRFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPREETT 120          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.422e-16
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 463
            + KLF  W   +++  D S   YI V      T + HT GR++ K+F K++  +VERL N LM    N G K   + IV+ A + IH  T++NP+QV+V  V N+ PRE+
Sbjct:   44 NAKLFGEWDVSEIEYEDPSTQRYITV------TPIAHTMGRHAAKQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPREE 147          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.009e-15
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  143 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            LFN++    V+++D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ T
Sbjct:    2 LFNKYDVNAVEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVT 106          

HSP 2 Score: 24.2534 bits (51), Expect = 1.009e-15
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SP RRV++A+  + TGA  ++F
Sbjct:  122 SPSRRVDEALRNIATGATNASF 143          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.312e-15
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  143 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            LF+++    V+V+D  +  YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ T
Sbjct:    2 LFDKYDVNSVEVHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVT 106          

HSP 2 Score: 24.2534 bits (51), Expect = 1.312e-15
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  517 SPLRRVNQAIYLLTTGARESAF 582
            SP RRV++A+  + TGA  ++F
Sbjct:  122 SPSRRVDEALRNIATGATNASF 143          
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  134 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 469
            D  +  ++    +Q++D+ L+ YI +    ++ +  HT GRYS     K     +ERL N LM   +  GKK  A R++K A EI+   T QNP+QV+++A+ NS PRE+ T
Sbjct:    2 DRLIMGKYDVSGIQIHDMGLAKYINL----NSYFNLHTGGRYSNYSAGKRNVNTIERLLNKLMRTEKWTGKKYSAYRVLKEAFEIVEQKTKQNPVQVLINAIENSAPREEVT 109          
The following BLAST results are available for this feature:
BLAST of BQ623138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_PYRHO6.890e-1841.2230S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]
RS7_NANEQ4.466e-1740.1630S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]
RS7_HALWD8.422e-1639.0930S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_THEAC1.009e-1538.5330S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_THEVO1.312e-1539.4530S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_PICTO3.538e-1436.6130S ribosomal protein S7P OS=Picrophilus torridus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00229 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00229 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623138 ID=BQ623138; Name=BQ623138; organism=Citrus sinensis; type=EST; length=598bp
GGGAGAACTCAGCGAGCGGCAGCCGATTCTTATTATTTTATCTCTCTCGC
TCTCTCACTCTCTCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAGTG
GCACAATCTCAAGACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAA
TAGGTGGACTTTCGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATT
ATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCT
GGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGA
GAGGCTTACGAACTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAAT
TGATGGCTGTCAGGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTG
ACCGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAACAGTGG
TCCAAGGGAAGATGCTACCCCGTATTGGATCTGCTGGTGTTGTTAGGCGT
CAAGCTGTGGATATTTTCCCCATTGCGCCGTGTGAATCAAGCGATCTATC
TACTCACCACTGGTGCTCGTGAATCTGCTTTTTCGTAACATAAAGACT
back to top