BQ623140

Overview
NameBQ623140
Unique NameBQ623140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10009 contig Csv1_Contig10009:956..1565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623140 vs. ExPASy Swiss-Prot
Match: URK_ERWT9 (Uridine kinase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=udk PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 29/83 (34.94%), Postives = 58/83 (69.88%), Query Frame = 3
Query:   39 IKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEAR-KPDFDAYIDPQKQYADAVI 284
            ++P K++++EG+  + DAR+R+ ++FSI++D   ++    +++RD+ ERG S++S+ A  +   +P F  +I+P KQYAD ++
Sbjct:  109 LEPKKVIILEGILLLTDARLRQEMNFSIFVDTPLDICLMRRMKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADIIV 191          
BLAST of BQ623140 vs. ExPASy Swiss-Prot
Match: URK_SERP5 (Uridine kinase OS=Serratia proteamaculans (strain 568) GN=udk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 29/83 (34.94%), Postives = 57/83 (68.67%), Query Frame = 3
Query:   39 IKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEAR-KPDFDAYIDPQKQYADAVI 284
            ++P K++++EG+  + D R+R+ ++FSI++D   ++    +++RD+ ERG S++S+ A  +   +P F  +IDP KQYAD ++
Sbjct:  109 LEPKKVIILEGILLLTDIRLRQEMNFSIFVDTPLDICLMRRMKRDVNERGRSMDSVMAQYQKTVRPMFLQFIDPSKQYADIIV 191          
BLAST of BQ623140 vs. ExPASy Swiss-Prot
Match: URK_LACSS (Uridine kinase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=udk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 27/83 (32.53%), Postives = 54/83 (65.06%), Query Frame = 3
Query:   39 IKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS-IEARKPDFDAYIDPQKQYADAVI 284
            ++P  ++++EG+  + DAR+R+L+D  +Y+D  ++++   ++ RDM  RG S + I    ++  KP F  +I+P K+YAD ++
Sbjct:  104 VEPQDVIILEGILVLADARLRDLMDIKVYVDTDDDIRLLRRMSRDMESRGRSFDDIVMQYLKTVKPMFHEFIEPTKRYADLIV 186          
The following BLAST results are available for this feature:
BLAST of BQ623140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
URK_ERWT96.530e-1134.94Uridine kinase OS=Erwinia tasmaniensis (strain DSM... [more]
URK_SERP58.528e-1134.94Uridine kinase OS=Serratia proteamaculans (strain ... [more]
URK_LACSS8.528e-1132.53Uridine kinase OS=Lactobacillus sakei subsp. sakei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00231 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00231 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623140 ID=BQ623140; Name=BQ623140; organism=Citrus sinensis; type=EST; length=611bp
ACAATCATGTCACCGGTCTCTTGGACCCCCCCGAGCTCATCAAGCCCCCC
AAGATCCTTGTCATTGAAGGCTTGCACCCAATGTATGATGCTCGGGTGAG
AGAGCTCTTGGACTTTAGTATCTATTTGGACATTAGCAATGAGGTTAAAT
TTGCATGGAAAATTCAGAGAGACATGACAGAGCGAGGACACAGTCTTGAG
AGCATCAAGGCTAGTATTGAAGCCCGAAAGCCAGATTTTGATGCCTATAT
TGATCCACAAAAGCAATATGCTGATGCAGTGATTGAAGTGTTACCAACCC
AACTGATTCCGGACGATAATGAAGGAAAGGTTTTGAGAGTTAGGTTGATC
ATGAAAGAAGGAGTGAAGCACTTCAGCCCGGTTTATCTGTTTGATGAAGG
ATCAACAATCGAATGGATACCTTGCGGAAGGAAGCTTACATGTTCTTACC
CCGGCATCAAATTCTCTTATGGCCCTGACGCTTACTTTGGCCATGAGGTC
TCGATTTTTGGAAATGGATGGGAAATTTGACAGGTTAGATGAGCTAATTT
ATGTCGAAAGCCATCTAAGCAACTTATCAACCAAGTTCTATGGGAGAAGT
CACCCAGCAAT
back to top