BQ623147

Overview
NameBQ623147
Unique NameBQ623147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:897..1543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.190e-65
Identity = 108/152 (71.05%), Postives = 137/152 (90.13%), Query Frame = 2
Query:   59 KRLQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            ++L E  PGDNVGFNVKNV+VKD++RG VAS+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRR+GK LE  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVG+IKSV+K D +G
Sbjct:  295 EQLAEGKPGDNVGFNVKNVSVKDIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          

HSP 2 Score: 36.1946 bits (82), Expect = 3.190e-65
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF PS +TTEVKSVEMHH  +
Sbjct:  277 TFAPSNVTTEVKSVEMHHEQL 297          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 4.160e-65
Identity = 112/146 (76.71%), Postives = 130/146 (89.04%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKN++VKD++RG VA +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VETFSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  299 LVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          

HSP 2 Score: 36.5798 bits (83), Expect = 4.160e-65
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF PS +TTEVKSVEMHH ++
Sbjct:  279 TFAPSNVTTEVKSVEMHHEAL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 5.425e-65
Identity = 108/150 (72.00%), Postives = 134/150 (89.33%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            L EA+PGDNVGFN+KNV+VK+++RG+VA +SK+DP + AA+F +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVVE FS+YPPLGRFAVRDMRQTVAVGVIK+V+ K+ +G
Sbjct:  299 LPEAVPGDNVGFNIKNVSVKEIRRGYVAGDSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          

HSP 2 Score: 36.965 bits (84), Expect = 5.425e-65
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  LTTEVKSVEMHH S+
Sbjct:  279 TFAPPNLTTEVKSVEMHHESL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 5.426e-65
Identity = 113/150 (75.33%), Postives = 133/150 (88.67%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            L EA+PGDNVGFNVKNV+VKD++RG+VASN+K+DPA+EAA+FT+QVII+NHPGQIGNGYAPVLDCHT HIA KF+ + TKIDRRSGKELE EPKF+K+GDA +V M P KPM VE+F+DYPPLG  +  DMRQTVAVGVIKSV KK+ TG
Sbjct:  287 LTEAVPGDNVGFNVKNVSVKDIRRGYVASNAKNDPAKEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          

HSP 2 Score: 36.5798 bits (83), Expect = 5.426e-65
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P+ LTTEVKSVEMHH ++
Sbjct:  267 TFAPNNLTTEVKSVEMHHEAL 287          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 9.223e-65
Identity = 108/150 (72.00%), Postives = 132/150 (88.00%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            LQEALPGDNVGFNVKN+++KD++RG VAS+SK+DPA+E   FT+QVIIMNHPGQI  GY PVLDCHT+HIA KF+EL  K+DRRSGK++E  PK LK+GDAG++ +IPTKP+ VETF++YPPLGRFAVRDMRQTVAVGVIK+V+K +  G
Sbjct:  299 LQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSEGVG 448          

HSP 2 Score: 36.1946 bits (82), Expect = 9.223e-65
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  LTTEVKSVEMHH ++
Sbjct:  279 TFAPQNLTTEVKSVEMHHEAL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 9.224e-65
Identity = 114/146 (78.08%), Postives = 130/146 (89.04%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EA+PGDNVGFNVKNV+VKD++RG VA +SK+DP  EA +FT+QVII+NHPGQIG GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  299 LTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          

HSP 2 Score: 34.2686 bits (77), Expect = 9.224e-65
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.568e-64
Identity = 110/147 (74.83%), Postives = 130/147 (88.44%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 505
            L EA+PGDNVGFNVKNV+VKD++RG V S+SK DPA+EA  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  299 LPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445          

HSP 2 Score: 36.1946 bits (82), Expect = 1.568e-64
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH S+
Sbjct:  279 TFAPQNVTTEVKSVEMHHESL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.667e-64
Identity = 114/146 (78.08%), Postives = 129/146 (88.36%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          

HSP 2 Score: 34.2686 bits (77), Expect = 2.667e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.477e-64
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          

HSP 2 Score: 34.2686 bits (77), Expect = 3.477e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.477e-64
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          

HSP 2 Score: 34.2686 bits (77), Expect = 3.477e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299          
The following BLAST results are available for this feature:
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_SCHCO3.190e-6571.05Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A3_XENLA4.160e-6576.71Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_ORYLA5.425e-6572.00Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_EUGGR5.426e-6575.33Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_ONCVO9.223e-6572.00Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A0_XENLA9.224e-6578.08Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A_CAEEL1.568e-6474.83Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_CHICK2.667e-6478.08Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A1_RAT3.477e-6477.40Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT3.477e-6477.40Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00238 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00238 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623147 ID=BQ623147; Name=BQ623147; organism=Citrus sinensis; type=EST; length=649bp
TGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATG
CACCATCGAAGCGTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTC
AACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTC
CAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTCACAGG
TCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCCCAGTG
CTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGAC
GAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCT
TGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATG
GTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCTGTTAG
GGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGA
AGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGA
GAAATTTTTATGGGTCTGTCTACAATAGTTAGGGGTTATTTTCTGTCTTT
TTTATTTTCTTTTCTGGTTTTGGTTTGCATCAATGTTTCTGCAAACAGA
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