BQ623147 | Citrus Genome Database

Overview


Name	BQ623147
Unique Name	BQ623147
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	649

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2169	contig	Csv1_Contig2169:897..1543.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 3.477e-64
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 2

Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 34.2686 bits (77), Expect = 3.477e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.477e-64
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 2

Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 34.2686 bits (77), Expect = 3.477e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 3.477e-64
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 2

Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 34.2686 bits (77), Expect = 3.477e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.477e-64
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 2

Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 34.2686 bits (77), Expect = 3.477e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.477e-64
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 2

Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 34.2686 bits (77), Expect = 3.477e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.477e-64
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 2

Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 34.2686 bits (77), Expect = 3.477e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.477e-64
Identity = 113/146 (77.40%), Postives = 129/146 (88.36%), Query Frame = 2

Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  299 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 34.2686 bits (77), Expect = 3.477e-64
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH ++
Sbjct:  279 TFAPVNVTTEVKSVEMHHEAL 299

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 3.477e-64
Identity = 107/152 (70.39%), Postives = 130/152 (85.53%), Query Frame = 2

Query:   59 KRLQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            ++L E LPGDNVGFNVKNV+VK+++RG VA +SK+DP +   +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSELV KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSV K D  G
Sbjct:  294 EQLSEGLPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSDKQG 445

HSP 2 Score: 37.3502 bits (85), Expect = 3.477e-64
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P+G+TTEVKSVEMHH  +
Sbjct:  276 TFAPAGVTTEVKSVEMHHEQL 296

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 4.534e-64
Identity = 112/146 (76.71%), Postives = 127/146 (86.99%), Query Frame = 2

Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            L EA PGDNVGFNVKNV+VKD++RG VA +SK+DP  EAANF +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSVEKK
Sbjct:  299 LTEATPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444

HSP 2 Score: 36.5798 bits (83), Expect = 4.534e-64
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P+ +TTEVKSVEMHH S+
Sbjct:  279 TFAPANVTTEVKSVEMHHESL 299

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 5.913e-64
Identity = 108/150 (72.00%), Postives = 131/150 (87.33%), Query Frame = 2

Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            L EA PGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D +G
Sbjct:  299 LPEAQPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448

HSP 2 Score: 36.1946 bits (82), Expect = 5.913e-64
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 3

Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P  +TTEVKSVEMHH S+
Sbjct:  279 TFAPQNVTTEVKSVEMHHESL 299

The following BLAST results are available for this feature:

BLAST of BQ623147 vs. ExPASy Swiss-Prot

BLAST of BQ623147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171


Match Name	E-value	Identity	Description
EF1A1_PONAB	3.477e-64	77.40	Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF...	[more]
EF1A1_PANTR	3.477e-64	77.40	Elongation factor 1-alpha 1 OS=Pan troglodytes GN=...	[more]
EF1A1_MOUSE	3.477e-64	77.40	Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef...	[more]
EF1A1_HUMAN	3.477e-64	77.40	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF...	[more]
EF1A1_FELCA	3.477e-64	77.40	Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1...	[more]
EF1A1_CRIGR	3.477e-64	77.40	Elongation factor 1-alpha 1 OS=Cricetulus griseus ...	[more]
EF1A1_BOVIN	3.477e-64	77.40	Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A...	[more]
EF1A_AURPU	3.477e-64	70.39	Elongation factor 1-alpha OS=Aureobasidium pullula...	[more]
EF1A_DANRE	4.534e-64	76.71	Elongation factor 1-alpha OS=Danio rerio GN=eef1a ...	[more]
EF1A2_OSCTI	5.913e-64	72.00	Elongation factor 1-alpha 2 OS=Oscheius tipulae GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00238 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00238 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623147 ID=BQ623147; Name=BQ623147; organism=Citrus sinensis; type=EST; length=649bp
TGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATG
CACCATCGAAGCGTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTC
AACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTC
CAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTCACAGG
TCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCCCAGTG
CTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGAC
GAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCT
TGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATG
GTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCTGTTAG
GGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGA
AGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGA
GAAATTTTTATGGGTCTGTCTACAATAGTTAGGGGTTATTTTCTGTCTTT
TTTATTTTCTTTTCTGGTTTTGGTTTGCATCAATGTTTCTGCAAACAGA