BQ623147

Overview
NameBQ623147
Unique NameBQ623147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:897..1543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.193e-61
Identity = 103/145 (71.03%), Postives = 125/145 (86.21%), Query Frame = 2
Query:   80 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            PGDNVGFNVKNV+VKD++RG VA +SK+DP +   +F +QVI++NHPGQIG GYAPVLDCHT+HIA KF  L+ KIDRR+GK++E  PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSVEK D  G
Sbjct:  303 PGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFDTLIEKIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 447          

HSP 2 Score: 34.6538 bits (78), Expect = 1.193e-61
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHH 56
            TF P+ +TTEVKSVEMHH
Sbjct:  277 TFAPANVTTEVKSVEMHH 294          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 1.556e-61
Identity = 102/150 (68.00%), Postives = 130/150 (86.67%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            LQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E+ PKF+K+GDA +V ++P+KP+ VE F ++PPLGRFAVRDMRQTVAVGVIK+V  KD +G
Sbjct:  299 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASG 448          

HSP 2 Score: 33.8834 bits (76), Expect = 1.556e-61
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSV 65
            F P+ +TTEVKSVEMHH ++
Sbjct:  280 FAPANITTEVKSVEMHHEAL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 2.645e-61
Identity = 102/152 (67.11%), Postives = 130/152 (85.53%), Query Frame = 2
Query:   59 KRLQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            +++ E LPGDNVGFNVKNV++KD++RG V  +SK+DP  EAA+F +QVI++NHPGQIG GY PVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VK++  KP+ VET++DYPPLGRFAVRDMRQTVAVGVIKSV+K +  G
Sbjct:  295 EQIPEGLPGDNVGFNVKNVSIKDIRRGNVCGDSKNDPPMEAASFNAQVIVLNHPGQIGAGYTPVLDCHTAHIACKFAELIEKIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          

HSP 2 Score: 33.8834 bits (76), Expect = 2.645e-61
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSV 65
            F P+ +TTEVKSVEMHH  +
Sbjct:  278 FAPTNVTTEVKSVEMHHEQI 297          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.646e-61
Identity = 99/151 (65.56%), Postives = 130/151 (86.09%), Query Frame = 2
Query:   59 KRLQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 511
            +++ EA+PGDNVGFNVKNV++KD+KRGFVAS++K+DPA+   +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ KF  +  K+D+RSGK LE+ PK +K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAVGVIKSV KK+ T
Sbjct:  281 EQMPEAVPGDNVGFNVKNVSIKDIKRGFVASDAKNDPAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKEAT 431          

HSP 2 Score: 37.3502 bits (85), Expect = 2.646e-61
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P+G+TTEVKSVEMHH  +
Sbjct:  263 TFAPAGVTTEVKSVEMHHEQM 283          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 4.508e-61
Identity = 103/151 (68.21%), Postives = 132/151 (87.42%), Query Frame = 2
Query:   62 RLQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            +L++A+PGDNVGFNVKNV+VKD+KRG VAS+SK+DPA+ AA+F +QVI+++HPGQI  GY+PV+DCHT+HIA KF+ L  ++DRRSGK LE +PKF+K GDA ++KM P+KPM VE+F +YPPLGRFAVRDM+QTVAVGVIK VEKK+  G
Sbjct:  183 QLEQAVPGDNVGFNVKNVSVKDVKRGHVASDSKNDPAKAAASFQAQVIVLHHPGQINPGYSPVVDCHTAHIACKFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          

HSP 2 Score: 33.8834 bits (76), Expect = 4.508e-61
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHH 56
            F P+GL TEVKSVEMHH
Sbjct:  165 FAPTGLQTEVKSVEMHH 181          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.862e-61
Identity = 105/145 (72.41%), Postives = 127/145 (87.59%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 499
            L EALPGDNVGFNVKNV++KD++RG VAS+SK+DPA EAA+F +QVII+NHPG+I  GY PVLDCHT+HIA KF+EL+ KIDRRSGK +E EPK +K+GDA ++ +IP+K M VE+FS YPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  301 LPEALPGDNVGFNVKNVSIKDIRRGMVASDSKNDPAIEAASFKAQVIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          

HSP 2 Score: 35.039 bits (79), Expect = 5.862e-61
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P+ L+TEVKSVEMHH S+
Sbjct:  281 TFCPANLSTEVKSVEMHHESL 301          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 9.967e-61
Identity = 103/150 (68.67%), Postives = 125/150 (83.33%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            L EALPGDNVGFNVKN++VK+L+RG+VA +SK+ P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E+ PK +K+GDA +V + PTKPM VE F ++PPLGRFAVRDMRQTVAVGVIKSV  KD  G
Sbjct:  299 LTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDTQG 448          

HSP 2 Score: 36.5798 bits (83), Expect = 9.967e-61
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P+ LTTEVKSVEMHH ++
Sbjct:  279 TFAPAALTTEVKSVEMHHEAL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 6.385e-60
Identity = 98/149 (65.77%), Postives = 127/149 (85.23%), Query Frame = 2
Query:   59 KRLQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 505
            ++L++ +PGDNVGFNVKNV+VK+++RG V  ++K+DP +  A+F + VI++NHPGQI  GY+PVLDCHT+HIA +F EL+ K DRRSGK+LE  PKFLK+GDA +VK +P+KPM VE FS+YPPLGRFAVRDMRQTVAVGVIKSV+K +
Sbjct:  295 EQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          

HSP 2 Score: 37.3502 bits (85), Expect = 6.385e-60
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P+G+TTEVKSVEMHH  +
Sbjct:  277 TFAPAGVTTEVKSVEMHHEQL 297          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.085e-59
Identity = 99/150 (66.00%), Postives = 129/150 (86.00%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            LQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  K+  G
Sbjct:  299 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGG 448          

HSP 2 Score: 33.8834 bits (76), Expect = 1.085e-59
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSV 65
            F P+ +TTEVKSVEMHH ++
Sbjct:  280 FAPANITTEVKSVEMHHEAL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.847e-59
Identity = 102/150 (68.00%), Postives = 126/150 (84.00%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 514
            L EA+PGDNVGFNVKNV+VK+L+RG+VA +SK +P + A NFT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIKSV  KD TG
Sbjct:  248 LTEAVPGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          

HSP 2 Score: 33.8834 bits (76), Expect = 1.847e-59
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSV 65
            F P+ +TTEVKSVEMHH ++
Sbjct:  229 FAPANITTEVKSVEMHHEAL 248          
The following BLAST results are available for this feature:
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_YARLI1.193e-6171.03Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A1_DROME1.556e-6168.00Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_CRYNE2.645e-6167.11Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A_CRYPV2.646e-6165.56Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_EIMBO4.508e-6168.21Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_HYDAT5.862e-6172.41Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_APIME9.967e-6168.67Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_YEAST6.385e-6065.77Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_BOMMO1.085e-5966.00Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_RHYAM1.847e-5968.00Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00238 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00238 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623147 ID=BQ623147; Name=BQ623147; organism=Citrus sinensis; type=EST; length=649bp
TGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATG
CACCATCGAAGCGTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTC
AACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTC
CAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTCACAGG
TCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCCCAGTG
CTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGAC
GAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCT
TGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATG
GTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCTGTTAG
GGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGA
AGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGA
GAAATTTTTATGGGTCTGTCTACAATAGTTAGGGGTTATTTTCTGTCTTT
TTTATTTTCTTTTCTGGTTTTGGTTTGCATCAATGTTTCTGCAAACAGA
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