BQ623147

Overview
NameBQ623147
Unique NameBQ623147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:897..1543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.405e-59
Identity = 101/149 (67.79%), Postives = 128/149 (85.91%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 511
            L EA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KFSE+  K DRR+GK  E EPK +K+GDA ++ ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIKSV  K+ T
Sbjct:  299 LTEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKETT 447          

HSP 2 Score: 31.5722 bits (70), Expect = 2.405e-59
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSV 65
            F P  L TEVKSVEMHH ++
Sbjct:  280 FAPVNLVTEVKSVEMHHEAL 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.416e-58
Identity = 104/149 (69.80%), Postives = 126/149 (84.56%), Query Frame = 2
Query:   59 KRLQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 505
            ++L EA+PGDNVGFN+K V+VKD++RG VAS++K+DPA+EAA F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  286 EQLPEAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          

HSP 2 Score: 26.1794 bits (56), Expect = 3.416e-58
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSV 65
            F P+ +  E KSVEMHH  +
Sbjct:  269 FAPNKVIAECKSVEMHHEQL 288          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 1.286e-57
Identity = 100/153 (65.36%), Postives = 125/153 (81.70%), Query Frame = 2
Query:   59 KRLQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKE---PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 508
            ++L EA PGDNVGFNVKNV+VK++KRG VA +SK+DP +E   F +QVI++NHPGQI  GY+PVLDCHT+HIA KF+E+V K+DRR+G  + KE      LKNGDA MV++ P++PM VE+F++YPPLGRFAVRDMRQTVAVGVIKS  KK P
Sbjct:  285 EQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          

HSP 2 Score: 36.965 bits (84), Expect = 1.286e-57
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P+GL+TEVKSVEMHH  +
Sbjct:  267 TFAPAGLSTEVKSVEMHHEQL 287          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.235e-57
Identity = 96/148 (64.86%), Postives = 123/148 (83.11%), Query Frame = 2
Query:   59 KRLQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            + + EA PG+NVGFNVK ++VKD+KRGFVAS+SK+DPA +  +F S  I+MNHPG+I  GY PV+DCHT+HIA KF EL+TK D+RSGK  E+ PKFLK GDAG++++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ ++KK
Sbjct:  285 EEVPEAAPGNNVGFNVKGLSVKDIKRGFVASDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          

HSP 2 Score: 31.9574 bits (71), Expect = 8.235e-57
Identity = 13/21 (61.90%), Postives = 14/21 (66.67%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHHRSV 65
            TF P G + E KSVEMHH  V
Sbjct:  267 TFAPKGCSAECKSVEMHHEEV 287          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.874e-56
Identity = 96/144 (66.67%), Postives = 124/144 (86.11%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELE-KEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 493
            L +A+PGDNVGFNV+N+ VKD+KRG VAS++K+ PA    +FT+QVI+MNHPGQI  GY PVLDCHTSHIA KF EL++KIDRR+GK +E  EP+++KNGD+ +VK++PTKP+ VE F+ +PPLGRFAVRDM+QTVAVGV+K+V
Sbjct:  285 LAQAIPGDNVGFNVRNLTVKDIKRGNVASDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          

HSP 2 Score: 31.5722 bits (70), Expect = 6.874e-56
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSVCR 71
            F PSG+++E KS+EMHH ++ +
Sbjct:  266 FAPSGVSSECKSIEMHHTALAQ 287          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.475e-55
Identity = 92/147 (62.59%), Postives = 128/147 (87.07%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 505
            L+EA PGDN+GFNVKNV+VK++KRG+VAS++K++PA+  + FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  + +KID+RSGK +E+ PK +K+GD+ +V + P KPMVVETF++YPPLGRFA+RDMRQT+AVG+I  +++K+
Sbjct:  285 LEEARPGDNIGFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          

HSP 2 Score: 25.409 bits (54), Expect = 7.475e-55
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMH 53
            F PS + +E KSVEMH
Sbjct:  266 FAPSAVVSECKSVEMH 281          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 3.667e-54
Identity = 96/146 (65.75%), Postives = 116/146 (79.45%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 502
            LQ A PG N+GFNVKN+AVK LKRG VA NSK DP  EA++FT+QVII+NHPG I  GY+PV+DCHT+HI  +F+EL  KIDRR+GK+LE  P  LK+GDA ++ + P KP  VE F DYPPLGRFA RD++QTVAVGV+KSVE K
Sbjct:  302 LQMAFPGFNIGFNVKNIAVKSLKRGNVAGNSKSDPPTEASSFTAQVIILNHPGFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHK 447          

HSP 2 Score: 32.3426 bits (72), Expect = 3.667e-54
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:    3 TFGPSGLTTEVKSVEMHH 56
            +F PSG + EVKS+EMHH
Sbjct:  282 SFAPSGFSAEVKSIEMHH 299          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.370e-52
Identity = 84/129 (65.12%), Postives = 112/129 (86.82%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 451
            LQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  285 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 33.8834 bits (76), Expect = 7.370e-52
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSV 65
            F P+ +TTEVKSVEMHH ++
Sbjct:  266 FAPANITTEVKSVEMHHEAL 285          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.370e-52
Identity = 84/129 (65.12%), Postives = 112/129 (86.82%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 451
            LQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  285 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 33.8834 bits (76), Expect = 7.370e-52
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSV 65
            F P+ +TTEVKSVEMHH ++
Sbjct:  266 FAPANITTEVKSVEMHHEAL 285          
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.370e-52
Identity = 84/129 (65.12%), Postives = 112/129 (86.82%), Query Frame = 2
Query:   65 LQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 451
            LQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  285 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 33.8834 bits (76), Expect = 7.370e-52
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    6 FGPSGLTTEVKSVEMHHRSV 65
            F P+ +TTEVKSVEMHH ++
Sbjct:  266 FAPANITTEVKSVEMHHEAL 285          
The following BLAST results are available for this feature:
BLAST of BQ623147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A2_DROME2.405e-5967.79Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_TETPY3.416e-5869.80Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_DICDI1.286e-5765.36Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A1_EUPCR8.235e-5764.86Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_ENTHI6.874e-5666.67Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_PLAFK7.475e-5562.59Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A1_XENLA3.667e-5465.75Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_SPOFR7.370e-5265.12Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE7.370e-5265.12Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI7.370e-5265.12Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00238 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00238 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623147 ID=BQ623147; Name=BQ623147; organism=Citrus sinensis; type=EST; length=649bp
TGACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATG
CACCATCGAAGCGTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTC
AACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTC
CAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTCACAGG
TCATCATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCCCAGTG
CTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGAC
GAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCT
TGAAGAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATG
GTTGTTGAGACATTCTCCGACTACCCACCCCTTGGTCGTTTTGCTGTTAG
GGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGA
AGGATCCCACAGGTGCCAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGA
GAAATTTTTATGGGTCTGTCTACAATAGTTAGGGGTTATTTTCTGTCTTT
TTTATTTTCTTTTCTGGTTTTGGTTTGCATCAATGTTTCTGCAAACAGA
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