BQ623152

Overview
NameBQ623152
Unique NameBQ623152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623152_ssr293 microsatellite BQ623152_ssr293:293..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig333 contig Csv1_Contig333:965..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.158e-14
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRN 173
            +YVLTYEDK+GDWMLVGDVPW MF  S +RLRIM+ S+A GLAPR  E + + RN
Sbjct:  210 EYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKS-KNRN 263          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQE 152
            SD V TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GLAPR ++
Sbjct:  182 SDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKD 230          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.818e-14
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQE 152
            SD V TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GLAPR ++
Sbjct:  182 SDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKD 230          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.680e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRN 173
            +YVLTYEDK+GDWMLVGDVPW MF  S +RLRIM+ S+A GLAPR  + + + RN
Sbjct:  204 EYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKS-KNRN 257          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.680e-14
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQE 152
            +YV TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GLAPR  E
Sbjct:  182 EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVE 229          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.399e-13
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQR 170
            +YVLTYEDK+ DWMLVGD+PW +F  S ++LRIMR S+A G+APR  E  G+ +
Sbjct:  228 EYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQTGQNK 281          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.399e-13
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQE 152
            DYV +YEDK+GDWMLVGDVPW MF+ + KRLR+M+ S+A GLAPR  E
Sbjct:  176 DYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAME 223          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.069e-13
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 3
Query:    3 TSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 134
            +S+Y++TY+DK+GDWMLVGDVPW MFLGSV RLRIM+TS   G+
Sbjct:  216 SSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPR 143
            ++YV TYEDK+GDWMLVGDVPW MF+ S KR+R+M++SEA  L+PR
Sbjct:  144 AEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPR 189          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 3
Query:    3 TSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEA--TGLAPR 143
            +SDYV TYEDK+GDWMLVGDVPW MF+ S KRLRIM+  EA   GLAPR
Sbjct:  186 SSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPR 234          
The following BLAST results are available for this feature:
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IAA3_ORYSJ2.158e-1467.27Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA13_ORYSJ2.818e-1473.47Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI2.818e-1473.47Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA17_ORYSJ3.680e-1465.45Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA11_ORYSJ3.680e-1475.00Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA19_ORYSJ1.399e-1359.26Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA17_ARATH1.399e-1368.75Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA10_ARATH4.069e-1370.45Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA23_ORYSJ5.314e-1367.39Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
AUX28_SOYBN5.314e-1373.47Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00243 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00243 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623152 ID=BQ623152; Name=BQ623152; organism=Citrus sinensis; type=EST; length=487bp
GAACATCTGACTATGTGCTCACGTACGAGGACAAGGAAGGAGATTGGATG
CTTGTTGGGGATGTCCCATGGGGCATGTTTCTTGGCTCTGTTAAGAGGCT
CCGAATCATGAGGACATCTGAAGCTACTGGACTTGCTCCAAGGTTACAAG
AAAGTAATGGGAGACAAAGAAACAGGCCCATCTAGCCTGTTTTCTCTTAA
GCATGATAAAAACATACTGCATCCTAAAAGGAGAAAAAGAGATACGAAAA
CAGGAAAAGCGTTTTGACTAGTAAAAATTTGCCCTCTACGGCTGTTTGTT
TGTTTTGTGGTTGCTTTATTATTTTACTATACCTATGTTCATTCTCAATA
TTGGTATCTGGCAACACTCACTATACTTTCTGGAAGCTACAAGCCTCTTA
GTATACAATATATAATACCTACAAGCATATACTTGAATGGACGTTGTGTT
TTAACGCTGTATATATCAGACCACTTCTATGTTTTTG
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