BQ623152

Overview
NameBQ623152
Unique NameBQ623152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623152_ssr293 microsatellite BQ623152_ssr293:293..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig333 contig Csv1_Contig333:965..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQR 170
            +YVLTYEDK+ DWMLVGD+PW +F    ++L+IMR S+A G+APR  E +G+ R
Sbjct:  218 EYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQSGQSR 271          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.941e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQR 170
            +YVLTYEDK+ DWMLVGD+PW +F    ++L+IMR S+A G+APR  E +G+ R
Sbjct:  219 EYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQSGQSR 272          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.065e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPR 143
            ++YV TYEDK+GDWMLVGDVPW MF+ + +RLR+M++SEA  LAPR
Sbjct:  151 TEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR 196          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.065e-13
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPR 143
            ++YV TYEDK+GDWMLVGDVPW MF+ + +RLR+M++SEA  LAPR
Sbjct:  165 NEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPR 210          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.184e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEAT--GLAPR 143
            +YV  YEDK+GDWML GDVPWGMFL S KRLRIM+ S+AT  GL PR
Sbjct:  147 EYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGLQPR 193          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRN 173
            ++ VLTYEDK+ DWMLVGDVPW MF  S +RLRIM+ S+A GLAPR  + + + RN
Sbjct:  212 TELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKS-KNRN 266          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.546e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 134
            S+Y  TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GL
Sbjct:  148 SEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGL 190          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 134
            SD+V TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ SE  GL
Sbjct:  139 SDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL--APRLQESN 158
            DYVLTYEDK+GDWMLVGDVPW MF+   K+L+IM+  +A GL  APR  E +
Sbjct:  283 DYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKS 334          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 134
            S+Y  TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GL
Sbjct:  150 SEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGL 192          
The following BLAST results are available for this feature:
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IAA5_ORYSJ6.941e-1357.41Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI6.941e-1357.41Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA1_ORYSJ9.065e-1367.39Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA15_ORYSJ9.065e-1367.39Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA19_ARATH1.184e-1272.34Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
IAA21_ORYSJ1.546e-1260.71Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
AX22D_PHAAU1.546e-1274.42Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
IAA4_ARATH2.638e-1274.42Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA9_ARATH3.445e-1263.46Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
AX22B_PHAAU3.445e-1274.42Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00243 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00243 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623152 ID=BQ623152; Name=BQ623152; organism=Citrus sinensis; type=EST; length=487bp
GAACATCTGACTATGTGCTCACGTACGAGGACAAGGAAGGAGATTGGATG
CTTGTTGGGGATGTCCCATGGGGCATGTTTCTTGGCTCTGTTAAGAGGCT
CCGAATCATGAGGACATCTGAAGCTACTGGACTTGCTCCAAGGTTACAAG
AAAGTAATGGGAGACAAAGAAACAGGCCCATCTAGCCTGTTTTCTCTTAA
GCATGATAAAAACATACTGCATCCTAAAAGGAGAAAAAGAGATACGAAAA
CAGGAAAAGCGTTTTGACTAGTAAAAATTTGCCCTCTACGGCTGTTTGTT
TGTTTTGTGGTTGCTTTATTATTTTACTATACCTATGTTCATTCTCAATA
TTGGTATCTGGCAACACTCACTATACTTTCTGGAAGCTACAAGCCTCTTA
GTATACAATATATAATACCTACAAGCATATACTTGAATGGACGTTGTGTT
TTAACGCTGTATATATCAGACCACTTCTATGTTTTTG
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