BQ623152

Overview
NameBQ623152
Unique NameBQ623152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623152_ssr293 microsatellite BQ623152_ssr293:293..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig333 contig Csv1_Contig333:965..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 134
            SD+V TYEDK+GDWML+GDVPW MF+ + KRLRIM+ SEA GL
Sbjct:  143 SDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.499e-12
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 134
            S+Y  TYEDK+GDWMLVGDVPW MF+ S KRLRI++ SEA GL
Sbjct:  158 SEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGL 200          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.674e-12
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGL 134
            S+Y  TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ +EA GL
Sbjct:  143 SEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGL 185          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.002e-11
Identity = 30/56 (53.57%), Postives = 46/56 (82.14%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAP-RLQESNGRQR 170
            S++VLTYEDK+GDWMLVGDVPW +F  + ++L+IM+ S++ GLAP  +++S  ++R
Sbjct:  265 SEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNKER 320          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 3
Query:    9 DYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQ 167
            +Y LTYED EGD MLVGDVPW MF+ SVKRLR+++TSE   ++  L   NG+Q
Sbjct:  213 EYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE---ISSALTYGNGKQ 262          
The following BLAST results are available for this feature:
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IAA3_ARATH4.499e-1272.09Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
AX22E_PHAAU4.499e-1272.09Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
IAA4_PEA7.674e-1272.09Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
IAA8_ARATH1.002e-1153.57Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA18_ARATH6.496e-1160.38Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00243 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00243 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623152 ID=BQ623152; Name=BQ623152; organism=Citrus sinensis; type=EST; length=487bp
GAACATCTGACTATGTGCTCACGTACGAGGACAAGGAAGGAGATTGGATG
CTTGTTGGGGATGTCCCATGGGGCATGTTTCTTGGCTCTGTTAAGAGGCT
CCGAATCATGAGGACATCTGAAGCTACTGGACTTGCTCCAAGGTTACAAG
AAAGTAATGGGAGACAAAGAAACAGGCCCATCTAGCCTGTTTTCTCTTAA
GCATGATAAAAACATACTGCATCCTAAAAGGAGAAAAAGAGATACGAAAA
CAGGAAAAGCGTTTTGACTAGTAAAAATTTGCCCTCTACGGCTGTTTGTT
TGTTTTGTGGTTGCTTTATTATTTTACTATACCTATGTTCATTCTCAATA
TTGGTATCTGGCAACACTCACTATACTTTCTGGAAGCTACAAGCCTCTTA
GTATACAATATATAATACCTACAAGCATATACTTGAATGGACGTTGTGTT
TTAACGCTGTATATATCAGACCACTTCTATGTTTTTG
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