BQ623160

Overview
NameBQ623160
Unique NameBQ623160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1041..1628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK2_PEA (S-adenosylmethionine synthetase 2 OS=Pisum sativum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.766e-46
Identity = 89/106 (83.96%), Postives = 98/106 (92.45%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 320
            GGGAFSGKDPTKVDRSGAYIVR+AAKSIVANGLARRC+VQVSYAIGVPEPLSVFVDSYGTGKIPD+EIL IVKE+FDFRPGM++I+LDL RGGNGRF + +    F
Sbjct:  268 GGGAFSGKDPTKVDRSGAYIVREAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGKIPDREILNIVKEAFDFRPGMISISLDLLRGGNGRFFEDSCIWTF 373          

HSP 2 Score: 23.0978 bits (48), Expect = 3.766e-46
Identity = 6/9 (66.67%), Postives = 7/9 (77.78%), Query Frame = 2
Query:  296 EDCCLWTLW 322
            ED C+WT W
Sbjct:  366 EDSCIWTFW 374          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.423e-46
Identity = 92/122 (75.41%), Postives = 102/122 (83.61%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPD-FTWEVVKPL 365
            GGGAFSGKDPTKVDRSGAYI RQ AKSIVA GLARR + Q+SYAIGV +PLS+ VD+YG+GKIPD EIL+ VKE FDFR GM+  +LDLKRGGN R+  TAAYGHFGRDD D FTWE V PL
Sbjct:  265 GGGAFSGKDPTKVDRSGAYIARQVAKSIVAAGLARRALFQISYAIGVAQPLSIHVDTYGSGKIPDSEILEKVKEKFDFRAGMIGKSLDLKRGGNKRYQTTAAYGHFGRDDTDVFTWEKVVPL 386          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_DICDI (S-adenosylmethionine synthetase OS=Dictyostelium discoideum GN=metK PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 82/122 (67.21%), Postives = 93/122 (76.23%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 368
            GGGAFSGKD TKVDRSGAY  R  AKS+VA GLA RC+VQVSY+IGV +PLSVFVD+YGTGK  D EIL I+  +FD RPG +  +L L R     F KTA+ GHFGR+DPDFTWE VK LK
Sbjct:  265 GGGAFSGKDATKVDRSGAYAARWIAKSLVAAGLADRCLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDNNFDLRPGCLMRDLQLTR---PIFQKTASGGHFGRNDPDFTWETVKELK 383          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_SYNWW (S-adenosylmethionine synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=metK PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.587e-35
Identity = 70/116 (60.34%), Postives = 93/116 (80.17%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDPTKVDRS +Y++R  AK+IVA GLA RC +QV+YAIGV  PLS+ V+++GTGKI D +I++++K++FD RP  +  +LDL+R     + KTAAYGHFGR+D +FTWE
Sbjct:  270 GGGAFSGKDPTKVDRSASYMLRYVAKNIVAAGLAERCEIQVAYAIGVANPLSINVNTFGTGKISDDKIIELIKKNFDLRPAAIIRDLDLRR---PIYRKTAAYGHFGREDAEFTWE 382          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_CELJU (S-adenosylmethionine synthetase OS=Cellvibrio japonicus (strain Ueda107) GN=metK PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.743e-34
Identity = 72/116 (62.07%), Postives = 90/116 (77.59%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV EP S+ ++++GTGK+PD EI+K+V+E FD RP  +   L+LKR     + +TAAYGHFGR+ PDFTWE
Sbjct:  260 GGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCEIQVSYAIGVAEPTSISINTFGTGKLPDAEIIKLVREHFDLRPRGLIEMLNLKR---PIYRQTAAYGHFGRELPDFTWE 372          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_SYMTH (S-adenosylmethionine synthetase OS=Symbiobacterium thermophilum GN=metK PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.277e-34
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDPTKVDRSGAY  R  AK+IVA GLAR+C VQV+YAIGV  P+S+ V ++GTGK+PD+ + ++V+E+FD RPG +  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  272 GGGAFSGKDPTKVDRSGAYAARWVAKNIVAAGLARKCEVQVAYAIGVAHPVSILVTTFGTGKLPDERLAQLVRETFDLRPGAIIRDLDLRR---PIYRQVAAYGHFGRPDLDLPWE 384          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_DECAR (S-adenosylmethionine synthetase OS=Dechloromonas aromatica (strain RCB) GN=metK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.973e-34
Identity = 71/116 (61.21%), Postives = 88/116 (75.86%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA RC+VQVSYAIGV EP S+ V++YGTGK+ ++ +  +V++ FD RP  +   LDL R     + KTAAYGHFGRD+P+FTWE
Sbjct:  261 GGGAFSGKDPSKVDRSAAYATRYVAKNIVAAGLASRCLVQVSYAIGVAEPTSIMVETYGTGKVSNETLTALVRKHFDLRPKGIVNMLDLLR---PIYQKTAAYGHFGRDEPEFTWE 373          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_CHRVO (S-adenosylmethionine synthetase OS=Chromobacterium violaceum GN=metK PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.072e-34
Identity = 72/116 (62.07%), Postives = 91/116 (78.45%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLAR+C +QVSYAIGV EP S+ VD++GT KIP+++I+++VK+ FD RP  +   LDL R   G   KTAAYGHFGR++P+F+WE
Sbjct:  263 GGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLARQCQIQVSYAIGVAEPTSIAVDTFGTNKIPNEKIVELVKKHFDLRPKGIIQMLDLLRPIYG---KTAAYGHFGREEPEFSWE 375          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_THIDA (S-adenosylmethionine synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.624e-34
Identity = 70/117 (59.83%), Postives = 91/117 (77.78%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 353
            GGGAFSGKDP+KVDRS AY  R  AK+IVA GLA +C+VQVSYAIGV +P S+ VD++GTGKIP+ +I+++++  FD RP  +   LDL R     + +TA+YGHFGRD+P+FTWEV
Sbjct:  262 GGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLADKCMVQVSYAIGVAKPTSLMVDTFGTGKIPEAKIVELIQAHFDLRPKGIVNMLDLLR---PIYTRTASYGHFGRDEPEFTWEV 375          
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Match: METK_GEOSM (S-adenosylmethionine synthetase OS=Geobacter sp. (strain M21) GN=metK PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.651e-34
Identity = 73/116 (62.93%), Postives = 87/116 (75.00%), Query Frame = 3
Query:    3 GGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 350
            GGGAFSGKDP+KVDRS AY+ R  AK++VA+G+  RC VQV+YAIGV EP+SV VD  GTGKIP K I +IV+E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  263 GGGAFSGKDPSKVDRSAAYMGRYVAKNLVASGVCERCEVQVAYAIGVAEPVSVMVDCNGTGKIPSKRISEIVREVFDMRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
The following BLAST results are available for this feature:
BLAST of BQ623160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_PEA3.766e-4683.96S-adenosylmethionine synthetase 2 OS=Pisum sativum... [more]
METK_OSTTA4.423e-4675.41S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]
METK_DICDI1.990e-3867.21S-adenosylmethionine synthetase OS=Dictyostelium d... [more]
METK_SYNWW4.587e-3560.34S-adenosylmethionine synthetase OS=Syntrophomonas ... [more]
METK_CELJU1.743e-3462.07S-adenosylmethionine synthetase OS=Cellvibrio japo... [more]
METK_SYMTH2.277e-3460.34S-adenosylmethionine synthetase OS=Symbiobacterium... [more]
METK_DECAR2.973e-3461.21S-adenosylmethionine synthetase OS=Dechloromonas a... [more]
METK_CHRVO5.072e-3462.07S-adenosylmethionine synthetase OS=Chromobacterium... [more]
METK_THIDA6.624e-3459.83S-adenosylmethionine synthetase OS=Thiobacillus de... [more]
METK_GEOSM8.651e-3462.93S-adenosylmethionine synthetase OS=Geobacter sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00251 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00251 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623160 ID=BQ623160; Name=BQ623160; organism=Citrus sinensis; type=EST; length=590bp
GGGGTGGCGGTGCTTTCTCTGGAAAAGACCCTACTAAGGTGGATAGGAGT
GGTGCATACATTGTTAGGCAGGCTGCTAAGAGCATTGTTGCAAACGGGCT
TGCTCGCAGGTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGC
CATTGTCTGTTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAG
GAGATCCTCAAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGAT
GACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGA
CTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGAA
GTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGA
AAAGTGAAAACTATCCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGA
TGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATC
TCCTGTGTTCAGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTGT
CTTCTTTTCCCCACTTCTTTTTTGGGTTTGGGTTAAATGT
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