BQ623161

Overview
NameBQ623161
Unique NameBQ623161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1354 contig Csv1_Contig1354:117..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 59/132 (44.70%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MA LW LP++FV ENN + +G +  R+++  + Y +G    +PG  VDGMD+L VRE  K A E    G+GP ++E  TYR+ GHS++DP      R+  ++ R   RDPIT  K  +I SSL +E ELKAI
Sbjct:  204 MAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYTRGDY--VPGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVR-KTRDPITGFKDRIITSSLATEEELKAI 332          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 58/123 (47.15%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEK-ARYAARDPITALKKYLIESSLTSE 369
            AA+   P VF+ ENN +AI + +   T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE   YR+  HS AD D    P E+ A +  +DPI   +++L    L +E
Sbjct:  190 AAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNE 312          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.919e-23
Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEK-ARYAARDPITALKKYLIESSLTSE 369
            AA+   P VFV ENN +AI + +   T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE   YR+  HS AD D    P E+ A +  +DPI   +++L    L +E
Sbjct:  190 AAVQGAPAVFVCENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNE 312          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_PANTR (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pan troglodytes GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 58/132 (43.94%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E +TYR+ GHS++ P      R+  ++ R +  DPI  LK  ++ S+L S  ELK I
Sbjct:  210 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSGPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEI 338          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_DICDI (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.506e-22
Identity = 51/131 (38.93%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYA--ARDPITALKKYLIESSLTSEAELKAI 387
            MA+LWKLP++F+ ENN + +G S  R+T+    Y +G    + G  VDGMDV  V+E  K A E  R G GP ++E +TYR+ GHS++DP       E+  +    RDPI  +++ ++++ + +E +L AI
Sbjct:  201 MASLWKLPVIFICENNKYGMGTSQKRSTAGHDFYTRGHY--VAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPIILEMDTYRYVGHSMSDPGITYRTREEVNHVRQTRDPIENIRQIILDNKIATEDQLAAI 329          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPT_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.602e-21
Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MA LW+LP+++V ENN + +G S  R+++    Y +G    +PGF VDGMDVL VR+  +   E    G+GP ++E  TYR+ GHS++DP      R+  ++ R   RDPIT  K  ++ + L +E ELK +
Sbjct:  201 MAKLWELPVLYVCENNGYGMGTSAARSSASTDYYTRGDY--VPGFWVDGMDVLAVRQAIRWGKEWCNAGKGPLMIEMATYRYGGHSMSDPGTSYRTREEIQEVR-KTRDPITGFKDKIVTAGLVTEDELKEV 329          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type I, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.087e-21
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MA LW LP+++V ENN + +G +  R+++    Y +G    +PG  VDGMDVL VR+  + A E    G+GP ++E  TYR+ GHS++DP      R+  ++ R   RDPIT  K  ++ + L +E E+K I
Sbjct:  206 MAKLWDLPVLYVCENNGYGMGTAAARSSASTDYYTRGDY--VPGIWVDGMDVLAVRQAVRWAKEWCNAGKGPLMIEMATYRYSGHSMSDPGTSYRTREEVQEVR-KTRDPITGFKDKIVTAGLVTEDEIKEI 334          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_YEAST (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=PDA1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKA 384
            MA LW LP+VF  ENN + +G +  R+++  + +K+G    +PG  V+GMD+L V + +K A +    G+GP ++E ETYR+ GHS++DP      RD  +  R +  DPI  LK +LI+  + +EAE+KA
Sbjct:  230 MAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQY--IPGLKVNGMDILAVYQASKFAKDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEIQHMR-SKNDPIAGLKMHLIDLGIATEAEVKA 357          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_STAAW (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLTSE 369
            AA +K P +FV++NN +AI     + T+   + +K  A G+PG  VDGMD L V +  KEA +RA  GEGPTL+E  TYR+  H++A  DP   R   E A +  +DP+   +K+L    L +E
Sbjct:  190 AAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNE 313          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_STAAS (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=pdhA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    4 AALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA--DPDELRDPAEKARYAARDPITALKKYLIESSLTSE 369
            AA +K P +FV++NN +AI     + T+   + +K  A G+PG  VDGMD L V +  KEA +RA  GEGPTL+E  TYR+  H++A  DP   R   E A +  +DP+   +K+L    L +E
Sbjct:  190 AAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVRFRKFLENKGLWNE 313          
The following BLAST results are available for this feature:
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ODPA_CAEEL2.919e-2344.70Probable pyruvate dehydrogenase E1 component subun... [more]
ODBA_THET82.919e-2347.152-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODBA_THET22.919e-2347.972-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_PANTR6.504e-2343.94Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_DICDI5.506e-2238.93Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPT_ASCSU1.602e-2140.15Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ASCSU6.087e-2139.39Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_YEAST1.038e-2040.46Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_STAAW1.038e-2041.13Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAS1.038e-2041.13Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00252 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00252 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623161 ID=BQ623161; Name=BQ623161; organism=Citrus sinensis; type=EST; length=390bp
ATGGCTGCATTGTGGAAGTTGCCCATTGTGTTTGTTGTGGAGAACAACTT
GTGGGCTATTGGTATGTCACATCTAAGGGCTACTTCAGATCCTCAGATTT
ATAAAAAGGGACCAGCATTTGGGATGCCAGGTTTTCACGTTGATGGGATG
GATGTTTTGAAGGTGAGGGAAGTGGCTAAAGAGGCAATTGAAAGAGCTAG
GAGAGGTGAAGGACCAACATTGGTGGAATGTGAGACGTACAGGTTTAGAG
GACACTCATTGGCTGACCCTGATGAGCTTCGTGACCCAGCGGAGAAGGCT
CGTTATGCTGCTAGAGATCCAATTACTGCTTTGAAGAAATACTTGATCGA
GAGCAGTCTAACTAGTGAAGCAGAGCTCAAGGCTATTTAA
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